RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 PDGFDQ9GZP0 370 aaPredicted RBP15.8■□□□□ 0.12
VPS9D1-201ENST00000389386 KLHL14Q9P2G3 628 aa15.8■□□□□ 0.12
VPS9D1-201ENST00000389386 NAGPAQ9UK23 515 aa15.8■□□□□ 0.12
VPS9D1-201ENST00000389386 TMEM120BA0PK00 339 aa15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 FAM187AA6NFU0 413 aa15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 SMAPO00193 183 aa15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 USP17L8P0C7I0 530 aa15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 INF2Q27J81 1249 aa15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 KIAA1755Q5JYT7 1200 aa15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 UNC13DQ70J99 1090 aa15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 ZNF333Q96JL9 665 aa15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 DCP1AQ9NPI6 582 aaPredicted RBP15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 SCOCQ9UIL1 159 aa15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 COL4A3BPQ9Y5P4 624 aa15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 PVALEFA0A1B0GWK0 134 aa15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 MYMKA6NI61 221 aa15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 ZSCAN9O15535 394 aaPredicted RBP15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 MAGEA8P43361 318 aa15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 VSTM1Q6UX27 236 aa15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 DZIP1Q86YF9 867 aaKnown RBP15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 TMEM237Q96Q45 408 aa15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 GANQ9H2C0 597 aa15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 GRHL1Q9NZI5 618 aa15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 CTTNBP2NLQ9P2B4 639 aa15.79■□□□□ 0.12
VPS9D1-201ENST00000389386 SIGLEC16A6NMB1 481 aa15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 ATP5HO75947 161 aa15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 CREB1P16220 341 aa15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 COPB2P35606 906 aa15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 WASHC2DQ5SRD0 308 aa15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 ALKBH5Q6P6C2 394 aaKnown RBP15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 SH3TC2Q8TF17 1288 aa15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 MMTAG2Q9BU76 263 aaKnown RBP15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 ATP8A2Q9NTI2 1148 aa15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 PCDHA6Q9UN73 950 aa15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 PCDHA8Q9Y5H6 950 aa15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 RIPK2O43353 540 aa15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 RASA1P20936 1047 aa15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 ACVR2BQ13705 512 aa15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 PPP2R5EQ16537 467 aa15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 MUM1Q2TAK8 710 aa15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 PABPC1LQ4VXU2 614 aaKnown RBP15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 SOGA3Q5TF21 947 aa15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 FOXR2Q6PJQ5 311 aa15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 JAMLQ86YT9 394 aa15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 GPKOWQ92917 476 aaPredicted RBP eCLIP15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 TSG101Q99816 390 aa15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 DMAP1Q9NPF5 467 aaPredicted RBP15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 MCM9Q9NXL9 1143 aa15.78■□□□□ 0.12
VPS9D1-201ENST00000389386 H0Y3Z8 333 aa15.77■□□□□ 0.12
VPS9D1-201ENST00000389386 POLRMTO00411 1230 aaKnown RBP15.77■□□□□ 0.12
VPS9D1-201ENST00000389386 CREB3O43889 395 aa15.77■□□□□ 0.12
VPS9D1-201ENST00000389386 PSMC4P43686 418 aa15.77■□□□□ 0.12
VPS9D1-201ENST00000389386 SV2BQ7L1I2 683 aa15.77■□□□□ 0.12
VPS9D1-201ENST00000389386 SYCE1Q8N0S2 351 aa15.77■□□□□ 0.12
VPS9D1-201ENST00000389386 GLIS3Q8NEA6 775 aa15.77■□□□□ 0.12
VPS9D1-201ENST00000389386 TTC8Q8TAM2 541 aa15.77■□□□□ 0.12
VPS9D1-201ENST00000389386 DYNLL2Q96FJ2 89 aa15.77■□□□□ 0.12
VPS9D1-201ENST00000389386 CAMKK2Q96RR4 588 aa15.77■□□□□ 0.12
VPS9D1-201ENST00000389386 CRAMP1Q96RY5 1269 aa15.77■□□□□ 0.12
VPS9D1-201ENST00000389386 NAP1L3Q99457 506 aaPredicted RBP15.77■□□□□ 0.12
VPS9D1-201ENST00000389386 ANKRD2Q9GZV1 360 aa15.77■□□□□ 0.12
VPS9D1-201ENST00000389386 RIC8AQ9NPQ8 531 aa15.77■□□□□ 0.12
VPS9D1-201ENST00000389386 SH3GLB2Q9NR46 395 aa15.77■□□□□ 0.12
VPS9D1-201ENST00000389386 LRCH1Q9Y2L9 728 aa15.77■□□□□ 0.12
VPS9D1-201ENST00000389386 NVLO15381 856 aaKnown RBP15.77■□□□□ 0.11
VPS9D1-201ENST00000389386 MKRN3Q13064 507 aaKnown RBP15.77■□□□□ 0.11
VPS9D1-201ENST00000389386 LRRC41Q15345 812 aa15.77■□□□□ 0.11
VPS9D1-201ENST00000389386 SESTD1Q86VW0 696 aa15.77■□□□□ 0.11
VPS9D1-201ENST00000389386 PLEKHG4BQ96PX9 1271 aa15.77■□□□□ 0.11
VPS9D1-201ENST00000389386 BRIP1Q9BX63 1249 aa15.77■□□□□ 0.11
VPS9D1-201ENST00000389386 MYLK2Q9H1R3 596 aa15.77■□□□□ 0.11
VPS9D1-201ENST00000389386 ZWILCHQ9H900 591 aa15.77■□□□□ 0.11
VPS9D1-201ENST00000389386 ERVK-5Q9HDB9 667 aa15.77■□□□□ 0.11
VPS9D1-201ENST00000389386 MLXIPLQ9NP71 852 aa15.77■□□□□ 0.11
VPS9D1-201ENST00000389386 NMRK1Q9NWW6 199 aa15.77■□□□□ 0.11
VPS9D1-201ENST00000389386 PHF24Q9UPV7 400 aa15.77■□□□□ 0.11
VPS9D1-201ENST00000389386 TNRC6CQ9HCJ0 1690 aaKnown RBP15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 A0A0A6YYK5 440 aaPredicted RBP15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 FGFR4P22455 802 aa15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 FKBP3Q00688 224 aaKnown RBP15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 DHX34Q14147 1143 aaKnown RBP15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 OTUD6AQ7L8S5 288 aa15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 ADAT2Q7Z6V5 191 aaKnown RBP15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 INPP5DQ92835 1189 aa15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 ARHGEF2Q92974 986 aaKnown RBP15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 ROPN1BQ9BZX4 212 aaPredicted RBP15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 ROPN1Q9HAT0 212 aaPredicted RBP15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 SEC63Q9UGP8 760 aaKnown RBP15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 NENFQ9UMX5 172 aa15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 USP20Q9Y2K6 914 aa15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 ENTPD5O75356 428 aa15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 MMP10P09238 476 aa15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 OR52Z1P0C646 297 aa15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 MPP2Q14168 576 aa15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 ZCWPW2Q504Y3 356 aa15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 DCAF12L1Q5VU92 463 aa15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 DYMQ7RTS9 669 aa15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 TGS1Q96RS0 853 aaKnown RBP15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 TBC1D10AQ9BXI6 508 aa15.76■□□□□ 0.11
VPS9D1-201ENST00000389386 CRNKL1Q9BZJ0 848 aaKnown RBP15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms