RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 GLYCTKQ8IVS8 523 aa14.94□□□□□ -0.02
SDC1-202ENST00000381150 SCFD2Q8WU76 684 aa14.94□□□□□ -0.02
SDC1-202ENST00000381150 RAB17Q9H0T7 212 aa14.94□□□□□ -0.02
SDC1-202ENST00000381150 IRAK4Q9NWZ3 460 aa14.94□□□□□ -0.02
SDC1-202ENST00000381150 NAGPAQ9UK23 515 aa14.94□□□□□ -0.02
SDC1-202ENST00000381150 COASYQ13057 564 aa14.94□□□□□ -0.02
SDC1-202ENST00000381150 ARHGAP44Q17R89 818 aa14.94□□□□□ -0.02
SDC1-202ENST00000381150 TATDN1Q6P1N9 297 aa14.94□□□□□ -0.02
SDC1-202ENST00000381150 C18orf8Q96DM3 657 aa14.94□□□□□ -0.02
SDC1-202ENST00000381150 SH3GL3Q99963 347 aa14.94□□□□□ -0.02
SDC1-202ENST00000381150 FAM196BA6NMK8 535 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 CETN3O15182 167 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 SUN1O94901 812 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 KCNJ1P48048 391 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 CTCFP49711 727 aaPredicted RBP14.93□□□□□ -0.02
SDC1-202ENST00000381150 TRIP13Q15645 432 aaPredicted RBP14.93□□□□□ -0.02
SDC1-202ENST00000381150 EXOC3L4Q17RC7 722 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 STRIP1Q5VSL9 837 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 CCDC105Q8IYK2 499 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 TPCN2Q8NHX9 752 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 RAD54LQ92698 747 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 NUCKS1Q9H1E3 243 aaKnown RBP14.93□□□□□ -0.02
SDC1-202ENST00000381150 KIAA1024Q9UPX6 916 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 EEF2P13639 858 aaKnown RBP14.93□□□□□ -0.02
SDC1-202ENST00000381150 MSH2P43246 934 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 POLE2P56282 527 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 KIAA0825Q8IV33 1275 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 NYAP2Q9P242 653 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 HDAC9Q9UKV0 1011 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 GHRP10912 638 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 NCALDP61601 193 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 RNF25Q96BH1 459 aaPredicted RBP14.93□□□□□ -0.02
SDC1-202ENST00000381150 TSC22D3Q99576 134 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 RAB34Q9BZG1 259 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 DHX36Q9H2U1 1008 aaKnown RBP14.93□□□□□ -0.02
SDC1-202ENST00000381150 PSTPIP2Q9H939 334 aa14.93□□□□□ -0.02
SDC1-202ENST00000381150 C5orf60A6NFR6 353 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 CCDC188H7C350 402 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 MEIS1O00470 390 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 NPM3O75607 178 aaKnown RBP14.92□□□□□ -0.02
SDC1-202ENST00000381150 PDE6CP51160 858 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 TCP10Q12799 353 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 P3H4Q92791 437 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 IFT74Q96LB3 600 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 TMEM237Q96Q45 408 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 P2RX7Q99572 595 aaKnown RBP14.92□□□□□ -0.02
SDC1-202ENST00000381150 ERVK-5Q9HDB9 667 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 BATF3Q9NR55 127 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 LRRN2O75325 713 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 UCHL3P15374 230 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 STX2P32856 288 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 RAD23BP54727 409 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 HYIQ5T013 277 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 FBF1Q8TES7 1133 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 CRYGNQ8WXF5 182 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 DNAJC19Q96DA6 116 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 CTNNAL1Q9UBT7 734 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 ARMCX3Q9UH62 379 aaPredicted RBP14.92□□□□□ -0.02
SDC1-202ENST00000381150 DDX25Q9UHL0 483 aaKnown RBP14.92□□□□□ -0.02
SDC1-202ENST00000381150 PPP1R9AQ9ULJ8 1098 aa14.92□□□□□ -0.02
SDC1-202ENST00000381150 USP15Q9Y4E8 981 aaPredicted RBP14.92□□□□□ -0.02
SDC1-202ENST00000381150 QRICH1Q2TAL8 776 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 EMC10Q5UCC4 262 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 GPBP1Q86WP2 473 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 RDH13Q8NBN7 331 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 ACTRT1Q8TDG2 376 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 CTNNBL1Q8WYA6 563 aaPredicted RBP14.91□□□□□ -0.02
SDC1-202ENST00000381150 ZNF317Q96PQ6 595 aaPredicted RBP14.91□□□□□ -0.02
SDC1-202ENST00000381150 EBF2Q9HAK2 575 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 PI4KBQ9UBF8 816 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 MTRF1LQ9UGC7 380 aaKnown RBP14.91□□□□□ -0.02
SDC1-202ENST00000381150 CFAP73A6NFT4 308 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 USP17L15C9J2P7 530 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 USP17L13C9JLJ4 530 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 USP17L11C9JVI0 530 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 USP17L18D6R9N7 530 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 USP17L22D6RA61 530 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 USP17L17D6RBQ6 530 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 USP17L19D6RCP7 530 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 USP17L20D6RJB6 530 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 GALCP54803 685 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 EIF3BP55884 814 aaKnown RBP14.91□□□□□ -0.02
SDC1-202ENST00000381150 USP17L24Q0WX57 530 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 USP17L6PQ6QN14 398 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 CAPN12Q6ZSI9 719 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 INTS8Q75QN2 995 aaKnown RBP14.91□□□□□ -0.02
SDC1-202ENST00000381150 C3orf20Q8ND61 904 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 FLAD1Q8NFF5 587 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 MAGEC3Q8TD91 643 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 ARHGEF2Q92974 986 aaKnown RBP14.91□□□□□ -0.02
SDC1-202ENST00000381150 MBOAT7Q96N66 472 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 PABPC3Q9H361 631 aaKnown RBP14.91□□□□□ -0.02
SDC1-202ENST00000381150 EMILIN3Q9NT22 766 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 TMEM120BA0PK00 339 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 APBA3O96018 575 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 GH1P01241 217 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 RARAP10276 462 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 COPS2P61201 443 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 JAG1P78504 1218 aa14.91□□□□□ -0.02
SDC1-202ENST00000381150 CERKLQ49MI3 558 aaPredicted RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms