RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 STAP2Q9UGK3 403 aa14.6□□□□□ -0.07
COL4A1-201ENST00000375820 ZRANB2O95218 330 aaKnown RBP eCLIP14.59□□□□□ -0.07
COL4A1-201ENST00000375820 LRRC23Q53EV4 343 aaPredicted RBP14.59□□□□□ -0.07
COL4A1-201ENST00000375820 NDUFAF2Q8N183 169 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 OR6P1Q8NGX9 317 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 FAM81BQ96LP2 452 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 EIF2AQ9BY44 585 aaKnown RBP14.59□□□□□ -0.07
COL4A1-201ENST00000375820 DDX47Q9H0S4 455 aaKnown RBP14.59□□□□□ -0.07
COL4A1-201ENST00000375820 ATG3Q9NT62 314 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 ABHD10Q9NUJ1 306 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 RCOR1Q9UKL0 485 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 HMGB1P1B2RPK0 211 aaPredicted RBP14.59□□□□□ -0.07
COL4A1-201ENST00000375820 PRDX5P30044 214 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 PRELPP51888 382 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 FASTKD1Q53R41 847 aaKnown RBP14.59□□□□□ -0.07
COL4A1-201ENST00000375820 LRRC8EQ6NSJ5 796 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 TTC8Q8TAM2 541 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 ZMAT2Q96NC0 199 aaKnown RBP14.59□□□□□ -0.07
COL4A1-201ENST00000375820 TUBB6Q9BUF5 446 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 DHX35Q9H5Z1 703 aaKnown RBP14.59□□□□□ -0.07
COL4A1-201ENST00000375820 ASNSD1Q9NWL6 643 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 MYBP10242 640 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 IFNAR1P17181 557 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 PMS2P54278 862 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 LRRC63Q05C16 580 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 EFTUD2Q15029 972 aaKnown RBP eCLIP14.59□□□□□ -0.07
COL4A1-201ENST00000375820 MAPK6Q16659 721 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 SLFN12LQ6IEE8 588 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 TSC22D3Q99576 134 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 CTIFO43310 598 aaKnown RBP14.59□□□□□ -0.07
COL4A1-201ENST00000375820 DCTN3O75935 186 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 KRT14P02533 472 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 PYGLP06737 847 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 GNA15P30679 374 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 TSPY1Q01534 308 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 COASYQ13057 564 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 SEPT2Q15019 361 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 C11orf74Q86VG3 221 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 PPHLN1Q8NEY8 458 aaKnown RBP14.59□□□□□ -0.07
COL4A1-201ENST00000375820 YY1AP1Q9H869 796 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 ECT2Q9H8V3 914 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 RESP18Q5W5W9 173 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 GABBR1Q9UBS5 961 aa14.59□□□□□ -0.07
COL4A1-201ENST00000375820 BBOX1O75936 387 aa14.58□□□□□ -0.07
COL4A1-201ENST00000375820 FGFR4P22455 802 aa14.58□□□□□ -0.07
COL4A1-201ENST00000375820 GPC5P78333 572 aa14.58□□□□□ -0.07
COL4A1-201ENST00000375820 KCNH2Q12809 1159 aa14.58□□□□□ -0.07
COL4A1-201ENST00000375820 CUL1Q13616 776 aa14.58□□□□□ -0.07
COL4A1-201ENST00000375820 TGS1Q96RS0 853 aaKnown RBP14.58□□□□□ -0.07
COL4A1-201ENST00000375820 PNMA6AP0CW24 399 aaPredicted RBP14.58□□□□□ -0.07
COL4A1-201ENST00000375820 SURF1Q15526 300 aa14.58□□□□□ -0.07
COL4A1-201ENST00000375820 SMAD5Q99717 465 aaKnown RBP14.58□□□□□ -0.07
COL4A1-201ENST00000375820 TRPC7Q9HCX4 862 aa14.58□□□□□ -0.07
COL4A1-201ENST00000375820 MID2Q9UJV3 735 aa14.58□□□□□ -0.07
COL4A1-201ENST00000375820 ARHGEF6Q15052 776 aa14.58□□□□□ -0.08
COL4A1-201ENST00000375820 PLEKHF1Q96S99 279 aa14.58□□□□□ -0.08
COL4A1-201ENST00000375820 ZNF302Q9NR11 478 aa14.58□□□□□ -0.08
COL4A1-201ENST00000375820 RXRBP28702 533 aa14.58□□□□□ -0.08
COL4A1-201ENST00000375820 RAP1GDS1P52306 607 aa14.58□□□□□ -0.08
COL4A1-201ENST00000375820 STXBP2Q15833 593 aa14.58□□□□□ -0.08
COL4A1-201ENST00000375820 LRRC31Q6UY01 552 aa14.58□□□□□ -0.08
COL4A1-201ENST00000375820 RHOT2Q8IXI1 618 aa14.58□□□□□ -0.08
COL4A1-201ENST00000375820 ACTR5Q9H9F9 607 aaPredicted RBP14.58□□□□□ -0.08
COL4A1-201ENST00000375820 HMBSP08397 361 aa14.58□□□□□ -0.08
COL4A1-201ENST00000375820 MMP10P09238 476 aa14.58□□□□□ -0.08
COL4A1-201ENST00000375820 TRIM49P0CI25 452 aa14.58□□□□□ -0.08
COL4A1-201ENST00000375820 TRIM49CP0CI26 452 aa14.58□□□□□ -0.08
COL4A1-201ENST00000375820 RC3H1Q5TC82 1133 aaKnown RBP14.58□□□□□ -0.08
COL4A1-201ENST00000375820 BZW1Q7L1Q6 419 aaKnown RBP14.58□□□□□ -0.08
COL4A1-201ENST00000375820 FAM160B2Q86V87 743 aa14.58□□□□□ -0.08
COL4A1-201ENST00000375820 RAD54LQ92698 747 aa14.58□□□□□ -0.08
COL4A1-201ENST00000375820 POLR3FQ9H1D9 316 aaPredicted RBP14.58□□□□□ -0.08
COL4A1-201ENST00000375820 AURKCQ9UQB9 309 aa14.58□□□□□ -0.08
COL4A1-201ENST00000375820 RMDN1Q96DB5 314 aa14.58□□□□□ -0.08
COL4A1-201ENST00000375820 CLCA2Q9UQC9 943 aa14.58□□□□□ -0.08
COL4A1-201ENST00000375820 KCNA2P16389 499 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 EIF3BP55884 814 aaKnown RBP14.57□□□□□ -0.08
COL4A1-201ENST00000375820 HEATR6Q6AI08 1181 aaKnown RBP14.57□□□□□ -0.08
COL4A1-201ENST00000375820 TMC4Q7Z404 712 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 AGAP3Q96P47 875 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 ZC4H2Q9NQZ6 224 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 STX18Q9P2W9 335 aaKnown RBP14.57□□□□□ -0.08
COL4A1-201ENST00000375820 SNX5Q9Y5X3 404 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 IPO5O00410 1097 aaKnown RBP14.57□□□□□ -0.08
COL4A1-201ENST00000375820 MAFGO15525 162 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 FTLP02792 175 aaPredicted RBP14.57□□□□□ -0.08
COL4A1-201ENST00000375820 CPB1P15086 417 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 NUMBP49757 651 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 ALDH18A1P54886 795 aaKnown RBP14.57□□□□□ -0.08
COL4A1-201ENST00000375820 TMEM60Q9H2L4 133 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 USP27XA6NNY8 438 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 SUPT3HO75486 399 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 IFNA8P32881 189 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 PRAMEP78395 509 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 GRAPQ13588 217 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 FAM102AQ5T9C2 384 aaPredicted RBP14.57□□□□□ -0.08
COL4A1-201ENST00000375820 GRAPLQ8TC17 118 aaPredicted RBP14.57□□□□□ -0.08
COL4A1-201ENST00000375820 USP33Q8TEY7 942 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 LZTS1Q9Y250 596 aa14.57□□□□□ -0.08
COL4A1-201ENST00000375820 PJA2O43164 708 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms