RNA–Protein interactions for RNA: ENST00000374198.4

PRPF4-201, Transcript of pre-mRNA processing factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PRPF4, Length 2,787 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4-201ENST00000374198 ANAPC4Q9UJX5 808 aa13.9□□□□□ -0.18
PRPF4-201ENST00000374198 UQCRFS1P1P0C7P4 283 aa13.9□□□□□ -0.18
PRPF4-201ENST00000374198 SFSWAPQ12872 951 aaKnown RBP13.9□□□□□ -0.18
PRPF4-201ENST00000374198 DHX34Q14147 1143 aaKnown RBP13.9□□□□□ -0.18
PRPF4-201ENST00000374198 RASIP1Q5U651 963 aa13.9□□□□□ -0.18
PRPF4-201ENST00000374198 SNX30Q5VWJ9 437 aa13.9□□□□□ -0.18
PRPF4-201ENST00000374198 ZNF571Q7Z3V5 609 aaPredicted RBP13.9□□□□□ -0.18
PRPF4-201ENST00000374198 FLAD1Q8NFF5 587 aa13.9□□□□□ -0.18
PRPF4-201ENST00000374198 RASGRP4Q8TDF6 673 aa13.9□□□□□ -0.18
PRPF4-201ENST00000374198 SCG3Q8WXD2 468 aaKnown RBP13.9□□□□□ -0.18
PRPF4-201ENST00000374198 SLC7A6OSQ96CW6 309 aaPredicted RBP13.9□□□□□ -0.18
PRPF4-201ENST00000374198 AK8Q96MA6 479 aa13.9□□□□□ -0.18
PRPF4-201ENST00000374198 KIAA1683Q9H0B3 1180 aa13.9□□□□□ -0.18
PRPF4-201ENST00000374198 GRHL1Q9NZI5 618 aa13.9□□□□□ -0.18
PRPF4-201ENST00000374198 NAGPAQ9UK23 515 aa13.9□□□□□ -0.18
PRPF4-201ENST00000374198 CETN3O15182 167 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 DDAH1O94760 285 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 COPB2P35606 906 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 POLGP54098 1239 aaPredicted RBP13.89□□□□□ -0.19
PRPF4-201ENST00000374198 SESN3P58005 492 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 CCDC6Q16204 474 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 ALKBH5Q6P6C2 394 aaKnown RBP13.89□□□□□ -0.19
PRPF4-201ENST00000374198 SMIM5Q71RC9 77 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 ZC3H18Q86VM9 953 aaKnown RBP13.89□□□□□ -0.19
PRPF4-201ENST00000374198 CRAMP1Q96RY5 1269 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 KCNK9Q9NPC2 374 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 MTRF1LQ9UGC7 380 aaKnown RBP13.89□□□□□ -0.19
PRPF4-201ENST00000374198 MINDY4BA8MYZ0 360 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 LAD1O00515 517 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 GH1P01241 217 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 LDHAL6AQ6ZMR3 332 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 SLC16A10Q8TF71 515 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 MAGEB18Q96M61 343 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 TSG101Q99816 390 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 TMEM165Q9HC07 324 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 USP40Q9NVE5 1235 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 RASAL2Q9UJF2 1139 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 ZNF510Q9Y2H8 683 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.89□□□□□ -0.19
PRPF4-201ENST00000374198 COL4A3BPQ9Y5P4 624 aa13.89□□□□□ -0.19
PRPF4-201ENST00000374198 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.88□□□□□ -0.19
PRPF4-201ENST00000374198 ATP6V1G1O75348 118 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 RARGP13631 454 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 YARSP54577 528 aaKnown RBP13.88□□□□□ -0.19
PRPF4-201ENST00000374198 MAPK7Q13164 816 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 ZC2HC1CQ53FD0 456 aaPredicted RBP13.88□□□□□ -0.19
PRPF4-201ENST00000374198 IRF2BP2Q7Z5L9 587 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 ADAT2Q7Z6V5 191 aaKnown RBP13.88□□□□□ -0.19
PRPF4-201ENST00000374198 LRRC37BQ96QE4 947 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 SPATA16Q9BXB7 569 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 ERVK-5Q9HDB9 667 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 CCDC87Q9NVE4 849 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 PCDHA4Q9UN74 947 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 CHKBQ9Y259 395 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 CCDC194A0A1B0GVG4 234 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 T-ENOLP0DO92 83 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 STX2P32856 288 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 RASSF2P50749 326 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 PRPF4BQ13523 1007 aaKnown RBP13.88□□□□□ -0.19
PRPF4-201ENST00000374198 MPP2Q14168 576 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 LONRF1Q17RB8 773 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 KHDC1Q4VXA5 237 aaKnown RBP13.88□□□□□ -0.19
PRPF4-201ENST00000374198 UNC13DQ70J99 1090 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 TRIM42Q8IWZ5 723 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 DNAJC10Q8IXB1 793 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 NRG4Q8WWG1 115 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 CARD9Q9H257 536 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 AMFRQ9UKV5 643 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 RTCBQ9Y3I0 505 aaKnown RBP13.88□□□□□ -0.19
PRPF4-201ENST00000374198 GMEB1Q9Y692 573 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 PITPNM2Q9BZ72 1349 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 A0A0A6YYK5 440 aaPredicted RBP13.88□□□□□ -0.19
PRPF4-201ENST00000374198 PVALEFA0A1B0GWK0 134 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 CSF1RP07333 972 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 RPL21P46778 160 aaKnown RBP13.88□□□□□ -0.19
PRPF4-201ENST00000374198 ZRSR2Q15696 482 aaKnown RBP13.88□□□□□ -0.19
PRPF4-201ENST00000374198 SPATA5Q8NB90 893 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 PITPNM3Q9BZ71 974 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 GANQ9H2C0 597 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 RIC8AQ9NPQ8 531 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 PARP2Q9UGN5 583 aa13.88□□□□□ -0.19
PRPF4-201ENST00000374198 DIS3Q9Y2L1 958 aaKnown RBP13.88□□□□□ -0.19
PRPF4-201ENST00000374198 BZW2Q9Y6E2 419 aaKnown RBP13.88□□□□□ -0.19
PRPF4-201ENST00000374198 SMIM22K7EJ46 135 aa13.87□□□□□ -0.19
PRPF4-201ENST00000374198 TRAFD1O14545 582 aaPredicted RBP13.87□□□□□ -0.19
PRPF4-201ENST00000374198 FAM200BP0CF97 657 aa13.87□□□□□ -0.19
PRPF4-201ENST00000374198 ATP5DP30049 168 aa13.87□□□□□ -0.19
PRPF4-201ENST00000374198 NPEPPSP55786 919 aa13.87□□□□□ -0.19
PRPF4-201ENST00000374198 LSAMPQ13449 338 aa13.87□□□□□ -0.19
PRPF4-201ENST00000374198 GIT2Q14161 759 aa13.87□□□□□ -0.19
PRPF4-201ENST00000374198 KPNB1Q14974 876 aaKnown RBP13.87□□□□□ -0.19
PRPF4-201ENST00000374198 DCAF12L1Q5VU92 463 aa13.87□□□□□ -0.19
PRPF4-201ENST00000374198 KIAA0825Q8IV33 1275 aa13.87□□□□□ -0.19
PRPF4-201ENST00000374198 VGLL2Q8N8G2 317 aa13.87□□□□□ -0.19
PRPF4-201ENST00000374198 RUNDC3BQ96NL0 473 aa13.87□□□□□ -0.19
PRPF4-201ENST00000374198 SERPINB12Q96P63 405 aa13.87□□□□□ -0.19
PRPF4-201ENST00000374198 HAPLN3Q96S86 360 aa13.87□□□□□ -0.19
PRPF4-201ENST00000374198 BCORQ6W2J9 1755 aa13.87□□□□□ -0.19
PRPF4-201ENST00000374198 MAPK13O15264 365 aa13.87□□□□□ -0.19
PRPF4-201ENST00000374198 CYP1A1P04798 512 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms