RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 FBXL18Q96ME1 805 aa9.48□□□□□ -0.89
SNRNP40-202ENST00000373720 TAAR1Q96RJ0 339 aa9.48□□□□□ -0.89
SNRNP40-202ENST00000373720 NIFKQ9BYG3 293 aaKnown RBP9.48□□□□□ -0.89
SNRNP40-202ENST00000373720 LACRTQ9GZZ8 138 aa9.48□□□□□ -0.89
SNRNP40-202ENST00000373720 FAM124BQ9H5Z6 455 aaPredicted RBP9.48□□□□□ -0.89
SNRNP40-202ENST00000373720 MED4Q9NPJ6 270 aa9.48□□□□□ -0.89
SNRNP40-202ENST00000373720 NAGPAQ9UK23 515 aa9.48□□□□□ -0.89
SNRNP40-202ENST00000373720 TTC7AQ9ULT0 858 aaPredicted RBP9.48□□□□□ -0.89
SNRNP40-202ENST00000373720 ASTN2O75129 1339 aaPredicted RBP9.48□□□□□ -0.89
SNRNP40-202ENST00000373720 DICER1Q9UPY3 1922 aaKnown RBP9.48□□□□□ -0.89
SNRNP40-202ENST00000373720 TESPA1A2RU30 521 aaPredicted RBP9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 C2orf72A6NCS6 295 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 CCDC188H7C350 402 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 FANCGO15287 622 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 PIGRP01833 764 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 TMEM253P0C7T8 217 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 SLURP2P0DP57 97 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 HSPA6P17066 643 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 EIF2AK2P19525 551 aaKnown RBP9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 GBP1P32455 592 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 EFNA5P52803 228 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 MFAP3P55082 362 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 APBA1Q02410 837 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 GRM1Q13255 1194 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 NNTQ13423 1086 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 IRF5Q13568 498 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 KIF22Q14807 665 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 XKR9Q5GH70 373 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 DCAF17Q5H9S7 520 aaPredicted RBP9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 KRT39Q6A163 491 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 DPY19L2P1Q6NXN4 242 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 ABHD15Q6UXT9 468 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 SAMD7Q7Z3H4 446 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 ZNF677Q86XU0 584 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 DAW1Q8N136 415 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 GLIS3Q8NEA6 775 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 SHCBP1Q8NEM2 672 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 CAGE1Q8TC20 777 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 AFAP1L1Q8TED9 768 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 SMCR8Q8TEV9 937 aaPredicted RBP9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 GJA10Q969M2 543 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 ATG4CQ96DT6 458 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 RUNDC3BQ96NL0 473 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 PLVAPQ9BX97 442 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 GLIS2Q9BZE0 524 aaPredicted RBP9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 IRX2Q9BZI1 471 aaPredicted RBP9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 PDGFDQ9GZP0 370 aaPredicted RBP9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 MROH8Q9H579 483 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 TMEM134Q9H6X4 195 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 ATP6V0A4Q9HBG4 840 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 SPON1Q9HCB6 807 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 PDLIM7Q9NR12 457 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 COL20A1Q9P218 1284 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 TBX20Q9UMR3 447 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 SLC45A1Q9Y2W3 748 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 MAFBQ9Y5Q3 323 aaPredicted RBP9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 STYXL1Q9Y6J8 313 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 ZMYM2Q9UBW7 1377 aa9.47□□□□□ -0.89
SNRNP40-202ENST00000373720 IGKV6D-21A0A0A0MT36 114 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 ANKRD62A6NC57 917 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 MIF4GDA9UHW6 222 aaKnown RBP9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 RSPH10B2B2RC85 870 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 F8VZ95 297 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 MAP2K7O14733 419 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 ZNF263O14978 683 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 TLR2O60603 784 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 USP2O75604 605 aaPredicted RBP9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 RSPH10BP0C881 870 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 PNMA6AP0CW24 399 aaPredicted RBP9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 MYCLP12524 364 aaPredicted RBP9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 KCNA2P16389 499 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 EDNRBP24530 442 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 NMT1P30419 496 aaKnown RBP9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 NAMPTP43490 491 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 KLK7P49862 253 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 TNNC1P63316 161 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 CLDN10P78369 228 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 MYL7Q01449 175 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 GCNT1Q02742 428 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 RAD51AP2Q09MP3 1159 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 STRN3Q13033 797 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 PTPN21Q16825 1174 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 HSP90B2PQ58FF3 399 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 MUM1L1Q5H9M0 696 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 UTP14CQ5TAP6 766 aaKnown RBP9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 MEI1Q5TIA1 1274 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 EMBQ6PCB8 327 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 SLFN11Q7Z7L1 901 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 BANK1Q8NDB2 785 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 ACTRT1Q8TDG2 376 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 TCP11Q8WWU5 503 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 SLC7A3Q8WY07 619 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 CTNNBL1Q8WYA6 563 aaPredicted RBP9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 TRIM11Q96F44 468 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 MFSD14AQ96MC6 490 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 OSBPL9Q96SU4 736 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 FAM129AQ9BZQ8 928 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 TMEM8AQ9HCN3 771 aa9.46□□□□□ -0.9
SNRNP40-202ENST00000373720 NLRC4Q9NPP4 1024 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms