RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 CCDC39Q9UFE4 941 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 SRP68Q9UHB9 627 aaKnown RBP4.35□□□□□ -1.71
MCF2-203ENST00000370576 TRMT112Q9UI30 125 aaKnown RBP4.35□□□□□ -1.71
MCF2-203ENST00000370576 FLT1P17948 1338 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 KRBA1A5PL33 1030 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 KLHL41O60662 606 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 MAFKO60675 156 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 GOSR1O95249 250 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 ZBED1O96006 694 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 CKMT1AP12532 417 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 PSMA5P28066 241 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 IRS1P35568 1242 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 SKIV2L2P42285 1042 aaKnown RBP4.35□□□□□ -1.71
MCF2-203ENST00000370576 PIP4K2AP48426 406 aaPredicted RBP4.35□□□□□ -1.71
MCF2-203ENST00000370576 IL1RL1Q01638 556 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 PCBP1Q15365 356 aaKnown RBP eCLIP4.35□□□□□ -1.71
MCF2-203ENST00000370576 NT5DC1Q5TFE4 455 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 C1orf228Q6PIY5 440 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 MYOCDQ8IZQ8 938 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 MASTLQ96GX5 879 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 PDLIM2Q96JY6 352 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 KCNK17Q96T54 332 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 RUSC1Q9BVN2 902 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 EHMT1Q9H9B1 1298 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 MRGBPQ9NV56 204 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 DACT1Q9NYF0 836 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 RRN3Q9NYV6 651 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 POLLQ9UGP5 575 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 RIMKLBQ9ULI2 386 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 ANKRD6Q9Y2G4 727 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 COL4A6Q14031 1691 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 TPP1O14773 563 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 EDIL3O43854 480 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 SERPINB2P05120 415 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 ZBTB48P10074 688 aaPredicted RBP4.34□□□□□ -1.71
MCF2-203ENST00000370576 PDIA3P30101 505 aaKnown RBP4.34□□□□□ -1.71
MCF2-203ENST00000370576 CTNNA1P35221 906 aaKnown RBP4.34□□□□□ -1.71
MCF2-203ENST00000370576 NR1H2P55055 460 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 RELQ04864 619 aaPredicted RBP4.34□□□□□ -1.71
MCF2-203ENST00000370576 IFRD2Q12894 506 aaPredicted RBP4.34□□□□□ -1.71
MCF2-203ENST00000370576 COG2Q14746 738 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 RASA2Q15283 850 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 KLHL40Q2TBA0 621 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 C16orf46Q6P387 395 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 MFSD6Q6ZSS7 791 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 NUP54Q7Z3B4 507 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 CEP57L1Q8IYX8 460 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 ZGPATQ8N5A5 531 aaKnown RBP4.34□□□□□ -1.71
MCF2-203ENST00000370576 TMEM102Q8N9M5 508 aaPredicted RBP4.34□□□□□ -1.71
MCF2-203ENST00000370576 ENGASEQ8NFI3 743 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 OR6P1Q8NGX9 317 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 BSNDQ8WZ55 320 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 RBM42Q9BTD8 480 aaKnown RBP4.34□□□□□ -1.71
MCF2-203ENST00000370576 TMEM120AQ9BXJ8 343 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 DNAJC18Q9H819 358 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 CGNQ9P2M7 1197 aaKnown RBP4.34□□□□□ -1.71
MCF2-203ENST00000370576 CTNNA3Q9UI47 895 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 HPSEQ9Y251 543 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 SYNDIG1LA6NDD5 238 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 MTRF1O75570 445 aaKnown RBP4.34□□□□□ -1.71
MCF2-203ENST00000370576 TBC1D8O95759 1140 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 MSL3P1P0C860 447 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 HOXA7P31268 230 aaPredicted RBP4.34□□□□□ -1.71
MCF2-203ENST00000370576 CYP2C19P33261 490 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 ALDH3A2P51648 485 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 NAP1L1P55209 391 aaKnown RBP4.34□□□□□ -1.71
MCF2-203ENST00000370576 TIMM10P62072 90 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 KIAA2012Q0VF49 1180 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 SGCGQ13326 291 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 SEMA5AQ13591 1074 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 TERF2Q15554 542 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 PTPN21Q16825 1174 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 C12orf60Q5U649 245 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 OGFOD3Q6PK18 319 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 ATCAYQ86WG3 371 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 SPATS2Q86XZ4 545 aaKnown RBP4.34□□□□□ -1.71
MCF2-203ENST00000370576 CCDC144CPQ8IYA2 1237 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 BICD2Q8TD16 824 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 ASB12Q8WXK4 309 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 TNPO1Q92973 898 aaKnown RBP4.34□□□□□ -1.71
MCF2-203ENST00000370576 SYAP1Q96A49 352 aaPredicted RBP4.34□□□□□ -1.71
MCF2-203ENST00000370576 FUBP3Q96I24 572 aaKnown RBP eCLIP4.34□□□□□ -1.71
MCF2-203ENST00000370576 BARD1Q99728 777 aaKnown RBP4.34□□□□□ -1.71
MCF2-203ENST00000370576 ALG1Q9BT22 464 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 TCHPQ9BT92 498 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 NT5C3AQ9H0P0 336 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 TBC1D7Q9P0N9 293 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 GPR34Q9UPC5 381 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 TRIM33Q9UPN9 1127 aa4.34□□□□□ -1.71
MCF2-203ENST00000370576 ESYT2A0FGR8 921 aa4.34□□□□□ -1.72
MCF2-203ENST00000370576 NPC1O15118 1278 aa4.34□□□□□ -1.72
MCF2-203ENST00000370576 DDAH1O94760 285 aa4.34□□□□□ -1.72
MCF2-203ENST00000370576 PRKD3O94806 890 aa4.34□□□□□ -1.72
MCF2-203ENST00000370576 IPO7O95373 1038 aaKnown RBP4.34□□□□□ -1.72
MCF2-203ENST00000370576 C6orf222P0C671 652 aaPredicted RBP4.34□□□□□ -1.72
MCF2-203ENST00000370576 AIMP1Q12904 312 aaKnown RBP4.34□□□□□ -1.72
MCF2-203ENST00000370576 GRB10Q13322 594 aa4.34□□□□□ -1.72
MCF2-203ENST00000370576 SLC14A1Q13336 389 aa4.34□□□□□ -1.72
MCF2-203ENST00000370576 PPP2R5DQ14738 602 aa4.34□□□□□ -1.72
MCF2-203ENST00000370576 ARID5BQ14865 1188 aa4.34□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms