RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 GPD1LQ8N335 351 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 ACER1Q8TDN7 264 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 PLSCR1O15162 318 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 MMP14P50281 582 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 CASP7P55210 303 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 SCFD2Q8WU76 684 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 BPIFA3Q9BQP9 254 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 TIPINQ9BVW5 301 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 RTFDC1Q9BY42 306 aaPredicted RBP12.42□□□□□ -0.42
SYNE1-204ENST00000367248 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.42□□□□□ -0.42
SYNE1-204ENST00000367248 SLIT1O75093 1534 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 TTC39CQ8N584 583 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 CABS1Q96KC9 395 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 INTS2Q9H0H0 1204 aaKnown RBP12.42□□□□□ -0.42
SYNE1-204ENST00000367248 SMARCAD1Q9H4L7 1026 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 CNOT8Q9UFF9 292 aaKnown RBP12.42□□□□□ -0.42
SYNE1-204ENST00000367248 AGO2Q9UKV8 859 aaKnown RBP12.42□□□□□ -0.42
SYNE1-204ENST00000367248 RPS6KA5O75582 802 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 IL1R1P14778 569 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 FOXD4Q12950 439 aaPredicted RBP12.42□□□□□ -0.42
SYNE1-204ENST00000367248 PBKQ96KB5 322 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 SPON2Q9BUD6 331 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 FBXO28Q9NVF7 368 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 SUCLA2Q9P2R7 463 aaPredicted RBP12.42□□□□□ -0.42
SYNE1-204ENST00000367248 TSR3Q9UJK0 312 aaKnown RBP12.42□□□□□ -0.42
SYNE1-204ENST00000367248 PRRG1O14668 218 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 PFASO15067 1338 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 KIAA0391O15091 583 aaKnown RBP12.42□□□□□ -0.42
SYNE1-204ENST00000367248 MAFGO15525 162 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 HMBSP08397 361 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 SRGAP2BP0DMP2 458 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 VEPH1Q14D04 833 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 RAPH1Q70E73 1250 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 C11orf70Q9BRQ4 267 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 PRKCBP05771 671 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 CIITAP33076 1130 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 OR1G1P47890 313 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 AP3M2P53677 418 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 RWDD2BP57060 319 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 ARL13BQ3SXY8 428 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 ZNF467Q7Z7K2 595 aaPredicted RBP12.41□□□□□ -0.42
SYNE1-204ENST00000367248 DDX53Q86TM3 631 aaKnown RBP12.41□□□□□ -0.42
SYNE1-204ENST00000367248 METTL16Q86W50 562 aaKnown RBP12.41□□□□□ -0.42
SYNE1-204ENST00000367248 ANGPTL3Q9Y5C1 460 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 TBXAS1P24557 533 aaPredicted RBP12.41□□□□□ -0.42
SYNE1-204ENST00000367248 OAS2P29728 719 aaKnown RBP12.41□□□□□ -0.42
SYNE1-204ENST00000367248 ATICP31939 592 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 THPOP40225 353 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 B4GALNT4Q76KP1 1039 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 LRRC71Q8N4P6 559 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 ATP6V1E2Q96A05 226 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 SIK2Q9H0K1 926 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 RBAKQ9NYW8 714 aaPredicted RBP12.41□□□□□ -0.42
SYNE1-204ENST00000367248 RNF40O75150 1001 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 MNAT1P51948 309 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 NME3Q13232 169 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 N4BP2L2Q92802 583 aaPredicted RBP12.41□□□□□ -0.42
SYNE1-204ENST00000367248 EHD4Q9H223 541 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 TACC3Q9Y6A5 838 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 PREX1Q8TCU6 1659 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 ANKRD20A3Q5VUR7 823 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 MXRA8Q9BRK3 442 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 APBA1Q02410 837 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 FBXL13Q8NEE6 735 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 PPP1R12CQ9BZL4 782 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 IRF1P10914 325 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 GRIK1P39086 918 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 NNMTP40261 264 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 RPS6P62753 249 aaKnown RBP12.41□□□□□ -0.42
SYNE1-204ENST00000367248 DDR1Q08345 913 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 CLEC17AQ6ZS10 378 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 CDC26Q8NHZ8 85 aa12.41□□□□□ -0.42
SYNE1-204ENST00000367248 ARHGEF18Q6ZSZ5 1173 aa12.4□□□□□ -0.42
SYNE1-204ENST00000367248 IPO11Q9UI26 975 aaKnown RBP12.4□□□□□ -0.42
SYNE1-204ENST00000367248 A8MXQ7 604 aa12.4□□□□□ -0.42
SYNE1-204ENST00000367248 MIF4GDA9UHW6 222 aaKnown RBP12.4□□□□□ -0.42
SYNE1-204ENST00000367248 CREB3O43889 395 aa12.4□□□□□ -0.42
SYNE1-204ENST00000367248 IGFBP4P22692 258 aa12.4□□□□□ -0.42
SYNE1-204ENST00000367248 HOXA10P31260 410 aaPredicted RBP12.4□□□□□ -0.42
SYNE1-204ENST00000367248 CDC42EP1Q00587 391 aa12.4□□□□□ -0.42
SYNE1-204ENST00000367248 PDE1BQ01064 536 aa12.4□□□□□ -0.42
SYNE1-204ENST00000367248 TOGARAM2Q6ZUX3 1019 aa12.4□□□□□ -0.42
SYNE1-204ENST00000367248 ERO1BQ86YB8 467 aa12.4□□□□□ -0.42
SYNE1-204ENST00000367248 PRG3Q9Y2Y8 225 aaPredicted RBP12.4□□□□□ -0.42
SYNE1-204ENST00000367248 PQBP1O60828 265 aaKnown RBP12.4□□□□□ -0.42
SYNE1-204ENST00000367248 PSMA2P25787 234 aa12.4□□□□□ -0.42
SYNE1-204ENST00000367248 PLTPP55058 493 aa12.4□□□□□ -0.42
SYNE1-204ENST00000367248 SMAP1Q8IYB5 467 aaPredicted RBP12.4□□□□□ -0.42
SYNE1-204ENST00000367248 CCDC13Q8IYE1 715 aa12.4□□□□□ -0.42
SYNE1-204ENST00000367248 SEPT5Q99719 369 aaPredicted RBP12.4□□□□□ -0.42
SYNE1-204ENST00000367248 HPS5Q9UPZ3 1129 aa12.4□□□□□ -0.42
SYNE1-204ENST00000367248 DARS2Q6PI48 645 aaKnown RBP12.4□□□□□ -0.42
SYNE1-204ENST00000367248 SDCCAG8Q86SQ7 713 aaPredicted RBP12.4□□□□□ -0.42
SYNE1-204ENST00000367248 BHMTQ93088 406 aa12.4□□□□□ -0.42
SYNE1-204ENST00000367248 KRT10P13645 584 aa12.4□□□□□ -0.42
SYNE1-204ENST00000367248 HDAC11Q96DB2 347 aa12.4□□□□□ -0.42
SYNE1-204ENST00000367248 ZNF560Q96MR9 790 aa12.4□□□□□ -0.42
SYNE1-204ENST00000367248 EFCC1Q9HA90 598 aa12.4□□□□□ -0.42
SYNE1-204ENST00000367248 MAGEB2O15479 319 aa12.39□□□□□ -0.43
SYNE1-204ENST00000367248 INPP5BP32019 993 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms