RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 DLC1Q96QB1 1528 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 ZNF233A6NK53 670 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 TRIM9Q9C026 710 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 ALG13Q9NP73 1137 aaKnown RBP20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 NCOA3Q9Y6Q9 1424 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 RNF103-CHMP3A0A140T963 221 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 SPDYE16A6NNV3 312 aaPredicted RBP20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 RAD51CO43502 376 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 CRKLP46109 303 aaKnown RBP20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 PEX3P56589 373 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 SPDYE2Q495Y8 402 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 AGBL2Q5U5Z8 902 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 CYB5D1Q6P9G0 228 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 DDX42Q86XP3 938 aaKnown RBP eCLIP20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 HPS3Q969F9 1004 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 ERP27Q96DN0 273 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 TRAF3IP3Q9Y228 551 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 LEMD3Q9Y2U8 911 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 SETD1BQ9UPS6 1966 aaKnown RBP20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 DPYDQ12882 1025 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 THOC5Q13769 683 aaKnown RBP20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 TMTC4Q5T4D3 741 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 TMEM154Q6P9G4 183 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 NUDCD3Q8IVD9 361 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 C7orf31Q8N865 590 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 XXYLT1Q8NBI6 393 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 TTC13Q8NBP0 860 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 HSPH1Q92598 858 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 TMEM47Q9BQJ4 181 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 WNT8AQ9H1J5 351 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 DBR1Q9UK59 544 aaKnown RBP20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 FAM205CA6NFA0 338 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 ALX1Q15699 326 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 STAT4Q14765 748 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 TRIM67Q6ZTA4 783 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 PASD1Q8IV76 773 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 MMGT1Q8N4V1 131 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 CALR3Q96L12 384 aaKnown RBP20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 PRDM4Q9UKN5 801 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 GSTA4O15217 222 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 AP5Z1O43299 807 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 ZNF394Q53GI3 561 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 NOD2Q9HC29 1040 aa20.81■□□□□ 0.92
CCDC88B-202ENST00000356786 CCDC22O60826 627 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 KRT17Q04695 432 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 CDO1Q16878 200 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 SLC13A1Q9BZW2 595 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 VPS11Q9H270 941 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 XDHP47989 1333 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 CDH16O75309 829 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 KCNA3P22001 575 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 PCYT1AP49585 367 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 SCARA5Q6ZMJ2 495 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 DNAJC9Q8WXX5 260 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 ADAM33Q9BZ11 813 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 ING2Q9H160 280 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 TRABDQ9H4I3 376 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 TFR2Q9UP52 801 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 H0YIN7 160 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 H3BQF6 201 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 USPL1Q5W0Q7 1092 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 ATP11CQ8NB49 1132 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 PIGBQ92521 554 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 INPP5FQ9Y2H2 1132 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 NRXN1Q9ULB1 1477 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 NVLO15381 856 aaKnown RBP20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 GDF11O95390 407 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 LONRF1Q17RB8 773 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 PPP6R3Q5H9R7 873 aaPredicted RBP20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 SENP1Q9P0U3 644 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 TAF6LQ9Y6J9 622 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 NCAPD2Q15021 1401 aa20.8■□□□□ 0.92
CCDC88B-202ENST00000356786 KDSRQ06136 332 aa20.79■□□□□ 0.92
CCDC88B-202ENST00000356786 LRRIQ3A6PVS8 624 aaPredicted RBP20.79■□□□□ 0.92
CCDC88B-202ENST00000356786 ALDH1B1P30837 517 aa20.79■□□□□ 0.92
CCDC88B-202ENST00000356786 MED21Q13503 144 aa20.79■□□□□ 0.92
CCDC88B-202ENST00000356786 LRRC36Q1X8D7 754 aa20.79■□□□□ 0.92
CCDC88B-202ENST00000356786 MROH7-TTC4A0A0A0MT08 1334 aa20.79■□□□□ 0.92
CCDC88B-202ENST00000356786 PFASO15067 1338 aa20.79■□□□□ 0.92
CCDC88B-202ENST00000356786 GGPS1O95749 300 aa20.79■□□□□ 0.92
CCDC88B-202ENST00000356786 NAALADL2Q58DX5 795 aa20.79■□□□□ 0.92
CCDC88B-202ENST00000356786 WDR93Q6P2C0 686 aa20.79■□□□□ 0.92
CCDC88B-202ENST00000356786 PPIP5K2O43314 1243 aa20.79■□□□□ 0.92
CCDC88B-202ENST00000356786 TFDP2Q14188 446 aa20.79■□□□□ 0.92
CCDC88B-202ENST00000356786 ACAD11Q709F0 780 aa20.79■□□□□ 0.92
CCDC88B-202ENST00000356786 TMEM35BQ8NCS4 154 aa20.79■□□□□ 0.92
CCDC88B-202ENST00000356786 EIF2AQ9BY44 585 aaKnown RBP20.79■□□□□ 0.92
CCDC88B-202ENST00000356786 CLEC11AQ9Y240 323 aa20.79■□□□□ 0.92
CCDC88B-202ENST00000356786 GSG1L2A8MUP6 293 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 TLR3O15455 904 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 TRIM49P0CI25 452 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 TRIM49CP0CI26 452 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 MYCBPAPQ8TBZ2 947 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 FUCA2Q9BTY2 467 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 ANGPTL3Q9Y5C1 460 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 IGF2BP3O00425 579 aaKnown RBP eCLIP20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 HNRNPCL1O60812 293 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 RSPH3Q86UC2 560 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 INTS2Q9H0H0 1204 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 WWP1Q9H0M0 922 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms