RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 IL17AQ16552 155 aa20.45■□□□□ 0.86
CLN3-202ENST00000355477 ABI1Q8IZP0 508 aa20.45■□□□□ 0.86
CLN3-202ENST00000355477 CCDC43Q96MW1 224 aaKnown RBP20.45■□□□□ 0.86
CLN3-202ENST00000355477 NECAB3Q96P71 396 aaPredicted RBP20.45■□□□□ 0.86
CLN3-202ENST00000355477 NACC1Q96RE7 527 aa20.45■□□□□ 0.86
CLN3-202ENST00000355477 AAASQ9NRG9 546 aa20.45■□□□□ 0.86
CLN3-202ENST00000355477 FAM105AQ9NUU6 356 aa20.45■□□□□ 0.86
CLN3-202ENST00000355477 DBR1Q9UK59 544 aaKnown RBP20.45■□□□□ 0.86
CLN3-202ENST00000355477 SMC3Q9UQE7 1217 aa20.45■□□□□ 0.86
CLN3-202ENST00000355477 C5orf42Q9H799 3197 aa20.45■□□□□ 0.86
CLN3-202ENST00000355477 USO1O60763 962 aaKnown RBP20.44■□□□□ 0.86
CLN3-202ENST00000355477 GLRA2P23416 452 aa20.44■□□□□ 0.86
CLN3-202ENST00000355477 GTF2F1P35269 517 aaKnown RBP eCLIP20.44■□□□□ 0.86
CLN3-202ENST00000355477 PTENP60484 403 aa20.44■□□□□ 0.86
CLN3-202ENST00000355477 HYAL1Q12794 435 aa20.44■□□□□ 0.86
CLN3-202ENST00000355477 CAPSQ13938 189 aa20.44■□□□□ 0.86
CLN3-202ENST00000355477 MAEAQ7L5Y9 396 aa20.44■□□□□ 0.86
CLN3-202ENST00000355477 ERMNQ8TAM6 284 aa20.44■□□□□ 0.86
CLN3-202ENST00000355477 UHRF1Q96T88 793 aaPredicted RBP20.44■□□□□ 0.86
CLN3-202ENST00000355477 POLR3FQ9H1D9 316 aaPredicted RBP20.44■□□□□ 0.86
CLN3-202ENST00000355477 GPRC5CQ9NQ84 441 aa20.44■□□□□ 0.86
CLN3-202ENST00000355477 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.44■□□□□ 0.86
CLN3-202ENST00000355477 PCDHGC5Q9Y5F6 944 aa20.44■□□□□ 0.86
CLN3-202ENST00000355477 H3BQV1 296 aa20.43■□□□□ 0.86
CLN3-202ENST00000355477 ZNF623O75123 536 aa20.43■□□□□ 0.86
CLN3-202ENST00000355477 FGF18O76093 207 aa20.43■□□□□ 0.86
CLN3-202ENST00000355477 LAG3P18627 525 aa20.43■□□□□ 0.86
CLN3-202ENST00000355477 PBX3P40426 434 aa20.43■□□□□ 0.86
CLN3-202ENST00000355477 PDIA5Q14554 519 aa20.43■□□□□ 0.86
CLN3-202ENST00000355477 UBXN11Q5T124 520 aa20.43■□□□□ 0.86
CLN3-202ENST00000355477 LRRC43Q8N309 656 aa20.43■□□□□ 0.86
CLN3-202ENST00000355477 IGSF22Q8N9C0 903 aa20.43■□□□□ 0.86
CLN3-202ENST00000355477 PABPC5Q96DU9 382 aaKnown RBP20.43■□□□□ 0.86
CLN3-202ENST00000355477 LRWD1Q9UFC0 647 aa20.43■□□□□ 0.86
CLN3-202ENST00000355477 PCDHB2Q9Y5E7 798 aa20.43■□□□□ 0.86
CLN3-202ENST00000355477 SKIP12755 728 aa20.42■□□□□ 0.86
CLN3-202ENST00000355477 LTBRP36941 435 aa20.42■□□□□ 0.86
CLN3-202ENST00000355477 CCT6AP40227 531 aaKnown RBP20.42■□□□□ 0.86
CLN3-202ENST00000355477 POU5F1BQ06416 359 aa20.42■□□□□ 0.86
CLN3-202ENST00000355477 TFDP1Q14186 410 aa20.42■□□□□ 0.86
CLN3-202ENST00000355477 LEXMQ3ZCV2 418 aa20.42■□□□□ 0.86
CLN3-202ENST00000355477 KCNT2Q6UVM3 1135 aa20.42■□□□□ 0.86
CLN3-202ENST00000355477 ADGRD2Q7Z7M1 963 aa20.42■□□□□ 0.86
CLN3-202ENST00000355477 IFNLR1Q8IU57 520 aaPredicted RBP20.42■□□□□ 0.86
CLN3-202ENST00000355477 THNSL1Q8IYQ7 743 aa20.42■□□□□ 0.86
CLN3-202ENST00000355477 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.42■□□□□ 0.86
CLN3-202ENST00000355477 IGFLR1Q9H665 355 aa20.42■□□□□ 0.86
CLN3-202ENST00000355477 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.42■□□□□ 0.86
CLN3-202ENST00000355477 PP2D1A8MPX8 630 aa20.41■□□□□ 0.86
CLN3-202ENST00000355477 H3BQ06 376 aaPredicted RBP20.41■□□□□ 0.86
CLN3-202ENST00000355477 TSPAN1O60635 241 aa20.41■□□□□ 0.86
CLN3-202ENST00000355477 RAB27AP51159 221 aa20.41■□□□□ 0.86
CLN3-202ENST00000355477 ERVFC1P60507 584 aa20.41■□□□□ 0.86
CLN3-202ENST00000355477 UBE3AQ05086 875 aa20.41■□□□□ 0.86
CLN3-202ENST00000355477 MBTD1Q05BQ5 628 aa20.41■□□□□ 0.86
CLN3-202ENST00000355477 AMHR2Q16671 573 aa20.41■□□□□ 0.86
CLN3-202ENST00000355477 CTC1Q2NKJ3 1217 aa20.41■□□□□ 0.86
CLN3-202ENST00000355477 RILPL1Q5EBL4 403 aa20.41■□□□□ 0.86
CLN3-202ENST00000355477 LARP1BQ659C4 914 aaKnown RBP20.41■□□□□ 0.86
CLN3-202ENST00000355477 PADI6Q6TGC4 694 aa20.41■□□□□ 0.86
CLN3-202ENST00000355477 AGMOQ6ZNB7 445 aa20.41■□□□□ 0.86
CLN3-202ENST00000355477 EP400NLQ6ZTU2 488 aa20.41■□□□□ 0.86
CLN3-202ENST00000355477 MRPL10Q7Z7H8 261 aaKnown RBP20.41■□□□□ 0.86
CLN3-202ENST00000355477 CPB2Q96IY4 423 aa20.41■□□□□ 0.86
CLN3-202ENST00000355477 ZNF558Q96NG5 402 aa20.41■□□□□ 0.86
CLN3-202ENST00000355477 CLDND1Q9NY35 253 aa20.41■□□□□ 0.86
CLN3-202ENST00000355477 KIAA1024Q9UPX6 916 aa20.41■□□□□ 0.86
CLN3-202ENST00000355477 INO80B-WBP1J3KQ70 363 aa20.4■□□□□ 0.86
CLN3-202ENST00000355477 TNFRSF10AO00220 468 aa20.4■□□□□ 0.86
CLN3-202ENST00000355477 LAD1O00515 517 aa20.4■□□□□ 0.86
CLN3-202ENST00000355477 LINC01565O15544 149 aa20.4■□□□□ 0.86
CLN3-202ENST00000355477 OFD1O75665 1012 aa20.4■□□□□ 0.86
CLN3-202ENST00000355477 ERLIN2O94905 339 aa20.4■□□□□ 0.86
CLN3-202ENST00000355477 MUTP22033 750 aa20.4■□□□□ 0.86
CLN3-202ENST00000355477 CDC25AP30304 524 aa20.4■□□□□ 0.86
CLN3-202ENST00000355477 DLX2Q07687 328 aaPredicted RBP20.4■□□□□ 0.86
CLN3-202ENST00000355477 CUL4AQ13619 759 aa20.4■□□□□ 0.86
CLN3-202ENST00000355477 CSPP1Q1MSJ5 1256 aa20.4■□□□□ 0.86
CLN3-202ENST00000355477 HAUS3Q68CZ6 603 aa20.4■□□□□ 0.86
CLN3-202ENST00000355477 MCPH1Q8NEM0 835 aa20.4■□□□□ 0.86
CLN3-202ENST00000355477 POLD4Q9HCU8 107 aa20.4■□□□□ 0.86
CLN3-202ENST00000355477 TDRD15B5MCY1 1934 aaKnown RBP20.39■□□□□ 0.86
CLN3-202ENST00000355477 ARHGEF35A5YM69 484 aa20.39■□□□□ 0.85
CLN3-202ENST00000355477 NCK2O43639 380 aa20.39■□□□□ 0.85
CLN3-202ENST00000355477 CYP11B2P19099 503 aa20.39■□□□□ 0.85
CLN3-202ENST00000355477 PRPHP41219 470 aa20.39■□□□□ 0.85
CLN3-202ENST00000355477 PLCB3Q01970 1234 aa20.39■□□□□ 0.85
CLN3-202ENST00000355477 PCBP1Q15365 356 aaKnown RBP eCLIP20.39■□□□□ 0.85
CLN3-202ENST00000355477 NOMO2Q5JPE7 1267 aa20.39■□□□□ 0.85
CLN3-202ENST00000355477 GLB1LQ6UWU2 654 aa20.39■□□□□ 0.85
CLN3-202ENST00000355477 DTHD1Q6ZMT9 781 aa20.39■□□□□ 0.85
CLN3-202ENST00000355477 RBM23Q86U06 439 aaKnown RBP20.39■□□□□ 0.85
CLN3-202ENST00000355477 SMG8Q8ND04 991 aaKnown RBP20.39■□□□□ 0.85
CLN3-202ENST00000355477 SNX29Q8TEQ0 813 aa20.39■□□□□ 0.85
CLN3-202ENST00000355477 BSNDQ8WZ55 320 aa20.39■□□□□ 0.85
CLN3-202ENST00000355477 EIF2AQ9BY44 585 aaKnown RBP20.39■□□□□ 0.85
CLN3-202ENST00000355477 NFKBIZQ9BYH8 718 aa20.39■□□□□ 0.85
CLN3-202ENST00000355477 TLR9Q9NR96 1032 aa20.39■□□□□ 0.85
CLN3-202ENST00000355477 DDX19AQ9NUU7 478 aaKnown RBP20.39■□□□□ 0.85
CLN3-202ENST00000355477 INPP5FQ9Y2H2 1132 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms