RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 DACT1Q9NYF0 836 aa12.65□□□□□ -0.38
RTN3-204ENST00000354497 GABBR1Q9UBS5 961 aa12.65□□□□□ -0.38
RTN3-204ENST00000354497 SIT1Q9Y3P8 196 aa12.65□□□□□ -0.38
RTN3-204ENST00000354497 MEIS1O00470 390 aa12.64□□□□□ -0.39
RTN3-204ENST00000354497 C2CD2LO14523 706 aa12.64□□□□□ -0.39
RTN3-204ENST00000354497 MAGEB2O15479 319 aa12.64□□□□□ -0.39
RTN3-204ENST00000354497 KINO60870 393 aaKnown RBP12.64□□□□□ -0.39
RTN3-204ENST00000354497 CALM1P0DP23 149 aa12.64□□□□□ -0.39
RTN3-204ENST00000354497 CALM2P0DP24 149 aa12.64□□□□□ -0.39
RTN3-204ENST00000354497 CALM3P0DP25 149 aa12.64□□□□□ -0.39
RTN3-204ENST00000354497 CLCN4P51793 760 aa12.64□□□□□ -0.39
RTN3-204ENST00000354497 WWC2Q6AWC2 1192 aa12.64□□□□□ -0.39
RTN3-204ENST00000354497 GLB1LQ6UWU2 654 aa12.64□□□□□ -0.39
RTN3-204ENST00000354497 C1orf210Q8IVY1 113 aa12.64□□□□□ -0.39
RTN3-204ENST00000354497 ST13P5Q8NFI4 369 aaPredicted RBP12.64□□□□□ -0.39
RTN3-204ENST00000354497 STAMQ92783 540 aa12.64□□□□□ -0.39
RTN3-204ENST00000354497 RWDD1Q9H446 243 aaPredicted RBP12.64□□□□□ -0.39
RTN3-204ENST00000354497 NRDE2Q9H7Z3 1164 aa12.64□□□□□ -0.39
RTN3-204ENST00000354497 RIC8AQ9NPQ8 531 aa12.64□□□□□ -0.39
RTN3-204ENST00000354497 MAN1C1Q9NR34 630 aa12.64□□□□□ -0.39
RTN3-204ENST00000354497 SAMM50Q9Y512 469 aa12.64□□□□□ -0.39
RTN3-204ENST00000354497 IRAK3Q9Y616 596 aa12.64□□□□□ -0.39
RTN3-204ENST00000354497 DNAH14Q0VDD8 3507 aa12.64□□□□□ -0.39
RTN3-204ENST00000354497 CCDC195A0A1B0GUA6 201 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 SH2B2O14492 632 aaPredicted RBP12.63□□□□□ -0.39
RTN3-204ENST00000354497 N4BP1O75113 896 aaKnown RBP12.63□□□□□ -0.39
RTN3-204ENST00000354497 KIF20AO95235 890 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 FOSP01100 380 aaPredicted RBP12.63□□□□□ -0.39
RTN3-204ENST00000354497 PSAPP07602 524 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 GALTP07902 379 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 CNPP09543 421 aaKnown RBP12.63□□□□□ -0.39
RTN3-204ENST00000354497 SRFP11831 508 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 DARSP14868 501 aaKnown RBP12.63□□□□□ -0.39
RTN3-204ENST00000354497 SLC11A1P49279 550 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 GPC3P51654 580 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 NUCB1Q02818 461 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 NOMO2Q5JPE7 1267 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 TWF2Q6IBS0 349 aaKnown RBP12.63□□□□□ -0.39
RTN3-204ENST00000354497 C15orf39Q6ZRI6 1047 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 TMTC3Q6ZXV5 915 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 SLC44A3Q8N4M1 653 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 RUFY2Q8WXA3 655 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 ZNF577Q9BSK1 485 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 FOXQ1Q9C009 403 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 ARHGEF3Q9NR81 526 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 TBC1D13Q9NVG8 400 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 DNAJB4Q9UDY4 337 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 SLC12A7Q9Y666 1083 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 STK24Q9Y6E0 443 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 CLUHO75153 1309 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 DMXL1Q9Y485 3027 aa12.63□□□□□ -0.39
RTN3-204ENST00000354497 POTEMA6NI47 508 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 IPO5O00410 1097 aaKnown RBP12.62□□□□□ -0.39
RTN3-204ENST00000354497 SEC24BO95487 1268 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 PHKA2P46019 1235 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 AK2P54819 239 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 ELMSAN1Q6PJG2 1045 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 DCLRE1AQ6PJP8 1040 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 POTEGQ6S5H5 508 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 MICU3Q86XE3 530 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 SMC5Q8IY18 1101 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 FAM167AQ96KS9 214 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 MYADMQ96S97 322 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 VN1R3Q9BXE9 311 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 PIDD1Q9HB75 910 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 MRPL17Q9NRX2 175 aaKnown RBP12.62□□□□□ -0.39
RTN3-204ENST00000354497 PIN4Q9Y237 131 aaKnown RBP12.62□□□□□ -0.39
RTN3-204ENST00000354497 MAFBQ9Y5Q3 323 aaPredicted RBP12.62□□□□□ -0.39
RTN3-204ENST00000354497 ZNF292O60281 2723 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 EVPLQ92817 2033 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 CARNS1A5YM72 827 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 SMCO2A6NFE2 343 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 FAM86B1E9PN63 330 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 INPPL1O15357 1258 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 DHX15O43143 795 aaKnown RBP12.62□□□□□ -0.39
RTN3-204ENST00000354497 LRRN2O75325 713 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 FAM86B2P0C5J1 330 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 SREBF1P36956 1147 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 ST3GAL2Q16842 350 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 JAKMIP3Q5VZ66 844 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 TYW1BQ6NUM6 668 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 GET4Q7L5D6 327 aaPredicted RBP12.62□□□□□ -0.39
RTN3-204ENST00000354497 NIPA1Q7RTP0 329 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 TMTC2Q8N394 836 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 SUMF1Q8NBK3 374 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 URGCPQ8TCY9 931 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 SMG7Q92540 1137 aaKnown RBP12.62□□□□□ -0.39
RTN3-204ENST00000354497 FAM193BQ96PV7 902 aaPredicted RBP12.62□□□□□ -0.39
RTN3-204ENST00000354497 LRRC2Q9BYS8 371 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 GCOM2Q9BZD3 368 aaPredicted RBP12.62□□□□□ -0.39
RTN3-204ENST00000354497 SPATA6Q9NWH7 488 aaPredicted RBP12.62□□□□□ -0.39
RTN3-204ENST00000354497 CDV3Q9UKY7 258 aaKnown RBP12.62□□□□□ -0.39
RTN3-204ENST00000354497 PCDHA10Q9Y5I2 948 aa12.62□□□□□ -0.39
RTN3-204ENST00000354497 MEIS3P2A8K0S8 358 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 OATP04181 439 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 URODP06132 367 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 SPATA31D3P0C874 917 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 SKIP12755 728 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 SDHBP21912 280 aa12.61□□□□□ -0.39
RTN3-204ENST00000354497 SFPQP23246 707 aaKnown RBP eCLIP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms