RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.46■■□□□ 1.519e-6■□□□□ 9.3
SHMT1-203ENST00000354098 NTPCRQ9BSD7 190 aaKnown RBP24.46■■□□□ 1.51
SHMT1-203ENST00000354098 NFKBIZQ9BYH8 718 aa24.46■■□□□ 1.51
SHMT1-203ENST00000354098 ERVK-5Q9HDB9 667 aa24.46■■□□□ 1.51
SHMT1-203ENST00000354098 KMT5AQ9NQR1 393 aa24.46■■□□□ 1.51
SHMT1-203ENST00000354098 PANK4Q9NVE7 773 aa24.46■■□□□ 1.51
SHMT1-203ENST00000354098 LARSQ9P2J5 1176 aaKnown RBP24.46■■□□□ 1.51
SHMT1-203ENST00000354098 FRMD3A2A2Y4 597 aa24.46■■□□□ 1.51
SHMT1-203ENST00000354098 GOLGA6L22H0YM25 854 aa24.46■■□□□ 1.51
SHMT1-203ENST00000354098 INO80B-WBP1J3KQ70 363 aa24.46■■□□□ 1.51
SHMT1-203ENST00000354098 TMEM240Q5SV17 173 aa24.46■■□□□ 1.51
SHMT1-203ENST00000354098 SFR1Q86XK3 245 aa24.46■■□□□ 1.51
SHMT1-203ENST00000354098 SEPT8Q92599 483 aa24.46■■□□□ 1.51
SHMT1-203ENST00000354098 FIZ1Q96SL8 496 aa24.46■■□□□ 1.51
SHMT1-203ENST00000354098 INO80BQ9C086 356 aaPredicted RBP24.46■■□□□ 1.51
SHMT1-203ENST00000354098 GPR182O15218 404 aa24.45■■□□□ 1.5
SHMT1-203ENST00000354098 PFKMP08237 780 aa24.45■■□□□ 1.5
SHMT1-203ENST00000354098 CNKSR3Q6P9H4 555 aa24.45■■□□□ 1.5
SHMT1-203ENST00000354098 OTOP2Q7RTS6 562 aa24.45■■□□□ 1.5
SHMT1-203ENST00000354098 SPIRE2Q8WWL2 714 aa24.45■■□□□ 1.5
SHMT1-203ENST00000354098 TIGD1Q96MW7 591 aa24.45■■□□□ 1.5
SHMT1-203ENST00000354098 TMX1Q9H3N1 280 aa24.45■■□□□ 1.5
SHMT1-203ENST00000354098 TBC1D7Q9P0N9 293 aa24.45■■□□□ 1.5
SHMT1-203ENST00000354098 GTPBP6O43824 516 aaPredicted RBP24.44■■□□□ 1.5
SHMT1-203ENST00000354098 TRAK2O60296 914 aa24.44■■□□□ 1.5
SHMT1-203ENST00000354098 FGBP02675 491 aa24.44■■□□□ 1.5
SHMT1-203ENST00000354098 HERC4Q5GLZ8 1057 aaPredicted RBP24.44■■□□□ 1.5
SHMT1-203ENST00000354098 ZBTB8OSQ8IWT0 167 aa24.44■■□□□ 1.5
SHMT1-203ENST00000354098 HPS3Q969F9 1004 aa24.44■■□□□ 1.5
SHMT1-203ENST00000354098 ARHGAP28Q9P2N2 729 aa24.44■■□□□ 1.5
SHMT1-203ENST00000354098 KINO60870 393 aaKnown RBP24.43■■□□□ 1.5
SHMT1-203ENST00000354098 SFPQP23246 707 aaKnown RBP eCLIP24.43■■□□□ 1.5
SHMT1-203ENST00000354098 NMT1P30419 496 aaKnown RBP24.43■■□□□ 1.5
SHMT1-203ENST00000354098 SMTNP53814 917 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 COASYQ13057 564 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 C9orf50Q5SZB4 431 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 CATSPER4Q7RTX7 472 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 CCDC65Q8IXS2 484 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 TMEM161BQ8NDZ6 487 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 UBE2OQ9C0C9 1292 aaKnown RBP24.43■■□□□ 1.5
SHMT1-203ENST00000354098 CCDC113Q9H0I3 377 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 C2orf40Q9H1Z8 148 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 USP20Q9Y2K6 914 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 MYH11P35749 1972 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 KLRC4O43908 158 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 GAP43P17677 238 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 MCM4P33991 863 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 NCKAP1LP55160 1127 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 PNOCQ13519 176 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 AMHR2Q16671 573 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 KANK3Q6NY19 840 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 PSRC1Q6PGN9 363 aaPredicted RBP24.43■■□□□ 1.5
SHMT1-203ENST00000354098 UNC13DQ70J99 1090 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 TAS1R3Q7RTX0 852 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 FAM178BQ8IXR5 827 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 ERCC4Q92889 916 aaPredicted RBP24.43■■□□□ 1.5
SHMT1-203ENST00000354098 FZD8Q9H461 694 aa24.43■■□□□ 1.5
SHMT1-203ENST00000354098 TTLL13PA6NNM8 815 aa24.42■■□□□ 1.5
SHMT1-203ENST00000354098 B4GALT5O43286 388 aa24.42■■□□□ 1.5
SHMT1-203ENST00000354098 MGEA5O60502 916 aa24.42■■□□□ 1.5
SHMT1-203ENST00000354098 EDN1P05305 212 aa24.42■■□□□ 1.5
SHMT1-203ENST00000354098 DPYDQ12882 1025 aa24.42■■□□□ 1.5
SHMT1-203ENST00000354098 POSTNQ15063 836 aa24.42■■□□□ 1.5
SHMT1-203ENST00000354098 HAUS6Q7Z4H7 955 aa24.42■■□□□ 1.5
SHMT1-203ENST00000354098 RTN4RL1Q86UN2 441 aaPredicted RBP24.42■■□□□ 1.5
SHMT1-203ENST00000354098 GPT2Q8TD30 523 aa24.42■■□□□ 1.5
SHMT1-203ENST00000354098 APBB2Q92870 758 aa24.42■■□□□ 1.5
SHMT1-203ENST00000354098 FGFBP2Q9BYJ0 223 aa24.42■■□□□ 1.5
SHMT1-203ENST00000354098 DENND3A2RUS2 1198 aa24.41■■□□□ 1.5
SHMT1-203ENST00000354098 K7ENM7 598 aa24.41■■□□□ 1.5
SHMT1-203ENST00000354098 K7ERI5 159 aa24.41■■□□□ 1.5
SHMT1-203ENST00000354098 TSPAN1O60635 241 aa24.41■■□□□ 1.5
SHMT1-203ENST00000354098 MYL1P05976 194 aa24.41■■□□□ 1.5
SHMT1-203ENST00000354098 MAPTP10636 758 aaKnown RBP24.41■■□□□ 1.5
SHMT1-203ENST00000354098 EFNA5P52803 228 aa24.41■■□□□ 1.5
SHMT1-203ENST00000354098 IKBKEQ14164 716 aa24.41■■□□□ 1.5
SHMT1-203ENST00000354098 SHHQ15465 462 aa24.41■■□□□ 1.5
SHMT1-203ENST00000354098 CHRDL2Q6WN34 429 aa24.41■■□□□ 1.5
SHMT1-203ENST00000354098 LINC01599Q8WXQ3 324 aa24.41■■□□□ 1.5
SHMT1-203ENST00000354098 KCNG1Q9UIX4 513 aa24.41■■□□□ 1.5
SHMT1-203ENST00000354098 PVALEFA0A1B0GWK0 134 aa24.4■■□□□ 1.5
SHMT1-203ENST00000354098 ERLIN2O94905 339 aa24.4■■□□□ 1.5
SHMT1-203ENST00000354098 PRKCBP05771 671 aa24.4■■□□□ 1.5
SHMT1-203ENST00000354098 HOXA11P31270 313 aaPredicted RBP24.4■■□□□ 1.5
SHMT1-203ENST00000354098 MAPK6Q16659 721 aa24.4■■□□□ 1.5
SHMT1-203ENST00000354098 ZC2HC1CQ53FD0 456 aaPredicted RBP24.4■■□□□ 1.5
SHMT1-203ENST00000354098 ZNF720Q7Z2F6 126 aa24.4■■□□□ 1.5
SHMT1-203ENST00000354098 CPB2Q96IY4 423 aa24.4■■□□□ 1.5
SHMT1-203ENST00000354098 TMEM134Q9H6X4 195 aa24.4■■□□□ 1.5
SHMT1-203ENST00000354098 MRPL44Q9H9J2 332 aaKnown RBP24.4■■□□□ 1.5
SHMT1-203ENST00000354098 CXXC1Q9P0U4 656 aaPredicted RBP24.4■■□□□ 1.5
SHMT1-203ENST00000354098 SEL1LQ9UBV2 794 aa24.4■■□□□ 1.5
SHMT1-203ENST00000354098 RANBP2P49792 3224 aaKnown RBP24.4■■□□□ 1.5
SHMT1-203ENST00000354098 ACTN1P12814 892 aa24.4■■□□□ 1.5
SHMT1-203ENST00000354098 CASP5P51878 434 aa24.4■■□□□ 1.5
SHMT1-203ENST00000354098 EHHADHQ08426 723 aa24.4■■□□□ 1.5
SHMT1-203ENST00000354098 DSC3Q14574 896 aa24.4■■□□□ 1.5
SHMT1-203ENST00000354098 GLIS3Q8NEA6 775 aa24.4■■□□□ 1.5
SHMT1-203ENST00000354098 CCDC34Q96HJ3 373 aa24.4■■□□□ 1.5
SHMT1-203ENST00000354098 ADAM2Q99965 735 aa24.4■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms