RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 CIAPIN1Q6FI81 312 aa23.62■■□□□ 1.37
SHMT1-202ENST00000352886 HAUS6Q7Z4H7 955 aa23.62■■□□□ 1.37
SHMT1-202ENST00000352886 PALB2Q86YC2 1186 aa23.62■■□□□ 1.37
SHMT1-202ENST00000352886 TEPSINQ96N21 525 aa23.62■■□□□ 1.37
SHMT1-202ENST00000352886 TAS2R14Q9NYV8 317 aa23.62■■□□□ 1.37
SHMT1-202ENST00000352886 AMFRQ9UKV5 643 aa23.62■■□□□ 1.37
SHMT1-202ENST00000352886 ASTN2O75129 1339 aaPredicted RBP23.62■■□□□ 1.37
SHMT1-202ENST00000352886 LYPLA2O95372 231 aa23.62■■□□□ 1.37
SHMT1-202ENST00000352886 KIF22Q14807 665 aa23.62■■□□□ 1.37
SHMT1-202ENST00000352886 RASGEF1CQ8N431 466 aa23.62■■□□□ 1.37
SHMT1-202ENST00000352886 ZSWIM2Q8NEG5 633 aa23.62■■□□□ 1.37
SHMT1-202ENST00000352886 UBE2TQ9NPD8 197 aaPredicted RBP23.62■■□□□ 1.37
SHMT1-202ENST00000352886 GPRC5CQ9NQ84 441 aa23.62■■□□□ 1.37
SHMT1-202ENST00000352886 HSPBP1Q9NZL4 362 aa23.62■■□□□ 1.37
SHMT1-202ENST00000352886 KRIT1O00522 736 aa23.61■■□□□ 1.37
SHMT1-202ENST00000352886 EGFRP00533 1210 aa23.61■■□□□ 1.37
SHMT1-202ENST00000352886 GCLMP48507 274 aa23.61■■□□□ 1.37
SHMT1-202ENST00000352886 ERVK-9P63128 1117 aa23.61■■□□□ 1.37
SHMT1-202ENST00000352886 CETN1Q12798 172 aa23.61■■□□□ 1.37
SHMT1-202ENST00000352886 C12orf56Q8IXR9 622 aa23.61■■□□□ 1.37
SHMT1-202ENST00000352886 XXYLT1Q8NBI6 393 aa23.61■■□□□ 1.37
SHMT1-202ENST00000352886 WHAMMQ8TF30 809 aa23.61■■□□□ 1.37
SHMT1-202ENST00000352886 ARL8AQ96BM9 186 aa23.61■■□□□ 1.37
SHMT1-202ENST00000352886 DDX47Q9H0S4 455 aaKnown RBP23.61■■□□□ 1.37
SHMT1-202ENST00000352886 TAF1DQ9H5J8 278 aaPredicted RBP23.61■■□□□ 1.37
SHMT1-202ENST00000352886 BACH1O14867 736 aa23.61■■□□□ 1.37
SHMT1-202ENST00000352886 SART1O43290 800 aaKnown RBP23.61■■□□□ 1.37
SHMT1-202ENST00000352886 ATP9AO75110 1047 aa23.61■■□□□ 1.37
SHMT1-202ENST00000352886 GTF2BQ00403 316 aa23.61■■□□□ 1.37
SHMT1-202ENST00000352886 TBC1D10BQ4KMP7 808 aaPredicted RBP23.61■■□□□ 1.37
SHMT1-202ENST00000352886 TTMPQ5BVD1 217 aa23.61■■□□□ 1.37
SHMT1-202ENST00000352886 CFAP58Q5T655 872 aa23.61■■□□□ 1.37
SHMT1-202ENST00000352886 ARHGEF19Q8IW93 802 aa23.61■■□□□ 1.37
SHMT1-202ENST00000352886 IQCKQ8N0W5 287 aa23.61■■□□□ 1.37
SHMT1-202ENST00000352886 MREGQ8N565 214 aa23.61■■□□□ 1.37
SHMT1-202ENST00000352886 THAP2Q9H0W7 228 aa23.61■■□□□ 1.37
SHMT1-202ENST00000352886 MAP3K20Q9NYL2 800 aaKnown RBP23.61■■□□□ 1.37
SHMT1-202ENST00000352886 PPP1R9AQ9ULJ8 1098 aa23.61■■□□□ 1.37
SHMT1-202ENST00000352886 SLC16A4O15374 487 aa23.6■■□□□ 1.37
SHMT1-202ENST00000352886 KRT14P02533 472 aa23.6■■□□□ 1.37
SHMT1-202ENST00000352886 VCAM1P19320 739 aa23.6■■□□□ 1.37
SHMT1-202ENST00000352886 PEX3P56589 373 aa23.6■■□□□ 1.37
SHMT1-202ENST00000352886 MTMR2Q13614 643 aa23.6■■□□□ 1.37
SHMT1-202ENST00000352886 FOXR1Q6PIV2 292 aa23.6■■□□□ 1.37
SHMT1-202ENST00000352886 TMEM174Q8WUU8 243 aa23.6■■□□□ 1.37
SHMT1-202ENST00000352886 ARHGEF26Q96DR7 871 aa23.6■■□□□ 1.37
SHMT1-202ENST00000352886 RMDN3Q96TC7 470 aa23.6■■□□□ 1.37
SHMT1-202ENST00000352886 ISCUQ9H1K1 167 aa23.6■■□□□ 1.37
SHMT1-202ENST00000352886 CTDP1Q9Y5B0 961 aaPredicted RBP23.6■■□□□ 1.37
SHMT1-202ENST00000352886 CCDC188H7C350 402 aa23.6■■□□□ 1.37
SHMT1-202ENST00000352886 PPATQ06203 517 aa23.6■■□□□ 1.37
SHMT1-202ENST00000352886 HLTFQ14527 1009 aaKnown RBP eCLIP23.6■■□□□ 1.37
SHMT1-202ENST00000352886 C4orf19Q8IY42 314 aa23.6■■□□□ 1.37
SHMT1-202ENST00000352886 PROCA1Q8NCQ7 364 aaPredicted RBP23.6■■□□□ 1.37
SHMT1-202ENST00000352886 AGPAT1Q99943 283 aa23.6■■□□□ 1.37
SHMT1-202ENST00000352886 ITGA4P13612 1032 aa23.59■■□□□ 1.37
SHMT1-202ENST00000352886 C1orf220Q5T0J3 134 aa23.59■■□□□ 1.37
SHMT1-202ENST00000352886 PLA2G4FQ68DD2 849 aa23.59■■□□□ 1.37
SHMT1-202ENST00000352886 SLC20A1Q8WUM9 679 aa23.59■■□□□ 1.37
SHMT1-202ENST00000352886 TCEAL9Q9UHQ7 104 aa23.59■■□□□ 1.37
SHMT1-202ENST00000352886 TESPA1A2RU30 521 aaPredicted RBP23.59■■□□□ 1.37
SHMT1-202ENST00000352886 ANKRD62A6NC57 917 aa23.59■■□□□ 1.37
SHMT1-202ENST00000352886 P4HA2O15460 535 aa23.59■■□□□ 1.37
SHMT1-202ENST00000352886 SHOX2O60902 331 aaPredicted RBP23.59■■□□□ 1.37
SHMT1-202ENST00000352886 PSMC5P62195 406 aa23.59■■□□□ 1.37
SHMT1-202ENST00000352886 TNFAIP1Q13829 316 aa23.59■■□□□ 1.37
SHMT1-202ENST00000352886 EPC2Q52LR7 807 aa23.59■■□□□ 1.37
SHMT1-202ENST00000352886 RNF207Q6ZRF8 634 aa23.59■■□□□ 1.37
SHMT1-202ENST00000352886 PLEKHO2Q8TD55 490 aa23.59■■□□□ 1.37
SHMT1-202ENST00000352886 TRERF1Q96PN7 1200 aa23.59■■□□□ 1.37
SHMT1-202ENST00000352886 PDCD2LQ9BRP1 358 aa23.59■■□□□ 1.37
SHMT1-202ENST00000352886 ST6GALNAC4Q9H4F1 302 aa23.59■■□□□ 1.37
SHMT1-202ENST00000352886 PXMP2Q9NR77 195 aa23.59■■□□□ 1.37
SHMT1-202ENST00000352886 CLSTN1O94985 981 aa23.58■■□□□ 1.37
SHMT1-202ENST00000352886 CCNE2O96020 404 aa23.58■■□□□ 1.37
SHMT1-202ENST00000352886 FAM102BQ5T8I3 360 aa23.58■■□□□ 1.37
SHMT1-202ENST00000352886 NSMFQ6X4W1 530 aa23.58■■□□□ 1.37
SHMT1-202ENST00000352886 PIK3R5Q8WYR1 880 aa23.58■■□□□ 1.37
SHMT1-202ENST00000352886 RPAP3Q9H6T3 665 aaPredicted RBP23.58■■□□□ 1.37
SHMT1-202ENST00000352886 WDR64B1ANS9 1081 aa23.58■■□□□ 1.36
SHMT1-202ENST00000352886 CTNND1O60716 968 aaKnown RBP23.58■■□□□ 1.36
SHMT1-202ENST00000352886 ECHS1P30084 290 aa23.58■■□□□ 1.36
SHMT1-202ENST00000352886 XKR9Q5GH70 373 aa23.58■■□□□ 1.36
SHMT1-202ENST00000352886 TIPINQ9BVW5 301 aa23.58■■□□□ 1.36
SHMT1-202ENST00000352886 AMACRQ9UHK6 382 aa23.58■■□□□ 1.36
SHMT1-202ENST00000352886 WDR81Q562E7 1941 aa23.57■■□□□ 1.36
SHMT1-202ENST00000352886 ZNF233A6NK53 670 aa23.57■■□□□ 1.36
SHMT1-202ENST00000352886 JAK3P52333 1124 aa23.57■■□□□ 1.36
SHMT1-202ENST00000352886 NCKAP1LP55160 1127 aa23.57■■□□□ 1.36
SHMT1-202ENST00000352886 CUL1Q13616 776 aa23.57■■□□□ 1.36
SHMT1-202ENST00000352886 ARHGEF16Q5VV41 709 aa23.57■■□□□ 1.36
SHMT1-202ENST00000352886 DDX42Q86XP3 938 aaKnown RBP eCLIP23.57■■□□□ 1.36
SHMT1-202ENST00000352886 SAMD3Q8N6K7 520 aa23.57■■□□□ 1.36
SHMT1-202ENST00000352886 JDP2Q8WYK2 163 aa23.57■■□□□ 1.36
SHMT1-202ENST00000352886 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP23.57■■□□□ 1.36
SHMT1-202ENST00000352886 COG5Q9UP83 839 aa23.57■■□□□ 1.36
SHMT1-202ENST00000352886 GOLGA8IPA6NC78 632 aa23.57■■□□□ 1.36
SHMT1-202ENST00000352886 GOLGA8JA6NMD2 632 aa23.57■■□□□ 1.36
SHMT1-202ENST00000352886 TULP1O00294 542 aaPredicted RBP23.57■■□□□ 1.36
SHMT1-202ENST00000352886 DDX3YO15523 660 aaKnown RBP23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms