RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 RNF216Q9NWF9 866 aaPredicted RBP17.12■□□□□ 0.33
VAPA-201ENST00000340541 RAPGEFL1Q9UHV5 662 aa17.12■□□□□ 0.33
VAPA-201ENST00000340541 KIAA1024Q9UPX6 916 aa17.12■□□□□ 0.33
VAPA-201ENST00000340541 HCN4Q9Y3Q4 1203 aa17.12■□□□□ 0.33
VAPA-201ENST00000340541 FNDC1Q4ZHG4 1894 aaPredicted RBP17.12■□□□□ 0.33
VAPA-201ENST00000340541 VWA3AA6NCI4 1184 aa17.11■□□□□ 0.33
VAPA-201ENST00000340541 ASAP2O43150 1006 aa17.11■□□□□ 0.33
VAPA-201ENST00000340541 STX6O43752 255 aa17.11■□□□□ 0.33
VAPA-201ENST00000340541 USO1O60763 962 aaKnown RBP17.11■□□□□ 0.33
VAPA-201ENST00000340541 SRGAP2CP0DJJ0 459 aa17.11■□□□□ 0.33
VAPA-201ENST00000340541 ALADP13716 330 aa17.11■□□□□ 0.33
VAPA-201ENST00000340541 GATMP50440 423 aa17.11■□□□□ 0.33
VAPA-201ENST00000340541 SF3A1Q15459 793 aaKnown RBP17.11■□□□□ 0.33
VAPA-201ENST00000340541 CTC1Q2NKJ3 1217 aa17.11■□□□□ 0.33
VAPA-201ENST00000340541 FAM173BQ6P4H8 233 aa17.11■□□□□ 0.33
VAPA-201ENST00000340541 CMTR2Q8IYT2 770 aaKnown RBP17.11■□□□□ 0.33
VAPA-201ENST00000340541 KHSRPQ92945 711 aaKnown RBP eCLIP17.11■□□□□ 0.339e-8■■■□□ 18.4
VAPA-201ENST00000340541 CCDC43Q96MW1 224 aaKnown RBP17.11■□□□□ 0.33
VAPA-201ENST00000340541 GPRC5CQ9NQ84 441 aa17.11■□□□□ 0.33
VAPA-201ENST00000340541 DDX19AQ9NUU7 478 aaKnown RBP17.11■□□□□ 0.33
VAPA-201ENST00000340541 STK24Q9Y6E0 443 aa17.11■□□□□ 0.33
VAPA-201ENST00000340541 KIAA1671Q9BY89 1806 aa17.11■□□□□ 0.33
VAPA-201ENST00000340541 IL9P15248 144 aa17.1■□□□□ 0.33
VAPA-201ENST00000340541 SFPQP23246 707 aaKnown RBP eCLIP17.1■□□□□ 0.338e-6■■■■□ 25.1
VAPA-201ENST00000340541 GLRA2P23416 452 aa17.1■□□□□ 0.33
VAPA-201ENST00000340541 POU5F1BQ06416 359 aa17.1■□□□□ 0.33
VAPA-201ENST00000340541 CAPSQ13938 189 aa17.1■□□□□ 0.33
VAPA-201ENST00000340541 MXD4Q14582 209 aaPredicted RBP17.1■□□□□ 0.33
VAPA-201ENST00000340541 PTPAQ15257 358 aa17.1■□□□□ 0.33
VAPA-201ENST00000340541 HYIQ5T013 277 aa17.1■□□□□ 0.33
VAPA-201ENST00000340541 KRT79Q5XKE5 535 aa17.1■□□□□ 0.33
VAPA-201ENST00000340541 PADI6Q6TGC4 694 aa17.1■□□□□ 0.33
VAPA-201ENST00000340541 KCNK18Q7Z418 384 aa17.1■□□□□ 0.33
VAPA-201ENST00000340541 SRGAP1Q7Z6B7 1085 aa17.1■□□□□ 0.33
VAPA-201ENST00000340541 IFNLR1Q8IU57 520 aaPredicted RBP17.1■□□□□ 0.33
VAPA-201ENST00000340541 RNF149Q8NC42 400 aa17.1■□□□□ 0.33
VAPA-201ENST00000340541 INO80BQ9C086 356 aaPredicted RBP17.1■□□□□ 0.33
VAPA-201ENST00000340541 ELAC1Q9H777 363 aaKnown RBP17.1■□□□□ 0.33
VAPA-201ENST00000340541 CHST12Q9NRB3 414 aa17.1■□□□□ 0.33
VAPA-201ENST00000340541 TMEM161AQ9NX61 479 aa17.1■□□□□ 0.33
VAPA-201ENST00000340541 E9PMD0 336 aa17.09■□□□□ 0.33
VAPA-201ENST00000340541 H3BQ06 376 aaPredicted RBP17.09■□□□□ 0.33
VAPA-201ENST00000340541 GRM6O15303 877 aa17.09■□□□□ 0.33
VAPA-201ENST00000340541 CYP11B2P19099 503 aa17.09■□□□□ 0.33
VAPA-201ENST00000340541 SSTR3P32745 418 aaPredicted RBP17.09■□□□□ 0.33
VAPA-201ENST00000340541 PTENP60484 403 aa17.09■□□□□ 0.33
VAPA-201ENST00000340541 GRIN1Q05586 938 aa17.09■□□□□ 0.33
VAPA-201ENST00000340541 ZNF598Q86UK7 904 aaKnown RBP17.09■□□□□ 0.33
VAPA-201ENST00000340541 MCPH1Q8NEM0 835 aa17.09■□□□□ 0.33
VAPA-201ENST00000340541 PPP2R3CQ969Q6 453 aa17.09■□□□□ 0.33
VAPA-201ENST00000340541 PNMA5Q96PV4 448 aa17.09■□□□□ 0.33
VAPA-201ENST00000340541 TRAIPQ9BWF2 469 aa17.09■□□□□ 0.33
VAPA-201ENST00000340541 POLR3FQ9H1D9 316 aaPredicted RBP17.09■□□□□ 0.33
VAPA-201ENST00000340541 BHMT2Q9H2M3 363 aa17.09■□□□□ 0.33
VAPA-201ENST00000340541 C11orf16Q9NQ32 467 aa17.09■□□□□ 0.33
VAPA-201ENST00000340541 AGPAT5Q9NUQ2 364 aa17.09■□□□□ 0.33
VAPA-201ENST00000340541 RNF19AQ9NV58 838 aa17.09■□□□□ 0.33
VAPA-201ENST00000340541 CLDND1Q9NY35 253 aa17.09■□□□□ 0.33
VAPA-201ENST00000340541 PLAGL2Q9UPG8 496 aa17.09■□□□□ 0.33
VAPA-201ENST00000340541 PCDHB7Q9Y5E2 793 aa17.09■□□□□ 0.33
VAPA-201ENST00000340541 CLIC4Q9Y696 253 aa17.09■□□□□ 0.33
VAPA-201ENST00000340541 MYH15Q9Y2K3 1946 aa17.08■□□□□ 0.33
VAPA-201ENST00000340541 A0A0U1RQF3 1178 aa17.08■□□□□ 0.32
VAPA-201ENST00000340541 ARHGEF35A5YM69 484 aa17.08■□□□□ 0.32
VAPA-201ENST00000340541 C19orf67A6NJJ6 358 aa17.08■□□□□ 0.32
VAPA-201ENST00000340541 PRR33A8MZF0 331 aa17.08■□□□□ 0.32
VAPA-201ENST00000340541 BMP15O95972 392 aa17.08■□□□□ 0.32
VAPA-201ENST00000340541 ZSCAN20P17040 1043 aaPredicted RBP17.08■□□□□ 0.32
VAPA-201ENST00000340541 ATF7P17544 494 aaPredicted RBP17.08■□□□□ 0.32
VAPA-201ENST00000340541 IBSPP21815 317 aaPredicted RBP17.08■□□□□ 0.32
VAPA-201ENST00000340541 LTBRP36941 435 aa17.08■□□□□ 0.32
VAPA-201ENST00000340541 FAM102BQ5T8I3 360 aa17.08■□□□□ 0.32
VAPA-201ENST00000340541 MAEAQ7L5Y9 396 aa17.08■□□□□ 0.32
VAPA-201ENST00000340541 CATSPER4Q7RTX7 472 aa17.08■□□□□ 0.32
VAPA-201ENST00000340541 ECHDC2Q86YB7 292 aa17.08■□□□□ 0.32
VAPA-201ENST00000340541 LRFN2Q9ULH4 789 aa17.08■□□□□ 0.32
VAPA-201ENST00000340541 MRPL42Q9Y6G3 142 aaKnown RBP17.08■□□□□ 0.32
VAPA-201ENST00000340541 EYA4O95677 639 aa17.07■□□□□ 0.32
VAPA-201ENST00000340541 FGFR1P11362 822 aa17.07■□□□□ 0.32
VAPA-201ENST00000340541 HOXA11P31270 313 aaPredicted RBP17.07■□□□□ 0.32
VAPA-201ENST00000340541 PHKA2P46019 1235 aa17.07■□□□□ 0.32
VAPA-201ENST00000340541 MBTD1Q05BQ5 628 aa17.07■□□□□ 0.32
VAPA-201ENST00000340541 HYAL1Q12794 435 aa17.07■□□□□ 0.32
VAPA-201ENST00000340541 TFDP1Q14186 410 aa17.07■□□□□ 0.32
VAPA-201ENST00000340541 AMHR2Q16671 573 aa17.07■□□□□ 0.32
VAPA-201ENST00000340541 ADHFE1Q8IWW8 467 aa17.07■□□□□ 0.32
VAPA-201ENST00000340541 BSNDQ8WZ55 320 aa17.07■□□□□ 0.32
VAPA-201ENST00000340541 AK8Q96MA6 479 aa17.07■□□□□ 0.32
VAPA-201ENST00000340541 NFKBIZQ9BYH8 718 aa17.07■□□□□ 0.32
VAPA-201ENST00000340541 DACT1Q9NYF0 836 aa17.07■□□□□ 0.32
VAPA-201ENST00000340541 PIN4Q9Y237 131 aaKnown RBP17.07■□□□□ 0.32
VAPA-201ENST00000340541 ADAM15Q13444 863 aa17.06■□□□□ 0.32
VAPA-201ENST00000340541 SMAD2Q15796 467 aaKnown RBP17.06■□□□□ 0.32
VAPA-201ENST00000340541 TMEM119Q4V9L6 283 aa17.06■□□□□ 0.32
VAPA-201ENST00000340541 PAN2Q504Q3 1202 aaKnown RBP17.06■□□□□ 0.32
VAPA-201ENST00000340541 UBXN11Q5T124 520 aa17.06■□□□□ 0.32
VAPA-201ENST00000340541 EP400NLQ6ZTU2 488 aa17.06■□□□□ 0.32
VAPA-201ENST00000340541 SPPL3Q8TCT6 385 aa17.06■□□□□ 0.32
VAPA-201ENST00000340541 LRRC15Q8TF66 581 aa17.06■□□□□ 0.32
VAPA-201ENST00000340541 USP28Q96RU2 1077 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms