RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 METAP2P50579 478 aaKnown RBP eCLIP10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 RASSF2P50749 326 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 PLTPP55058 493 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 PDE1BQ01064 536 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 THOC5Q13769 683 aaKnown RBP10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 RRAGAQ7L523 313 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 WAPLQ7Z5K2 1190 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 PHLDB2Q86SQ0 1253 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 SAMD3Q8N6K7 520 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 DIS3LQ8TF46 1054 aaKnown RBP10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 SUCLG2Q96I99 432 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 HNRNPABQ99729 332 aaKnown RBP10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 NACAP1Q9BZK3 213 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 NT5C3AQ9H0P0 336 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 SEMA4AQ9H3S1 761 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 EXOC1Q9NV70 894 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 FAF1Q9UNN5 650 aaPredicted RBP10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 NR2E1Q9Y466 385 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 KAT6BQ8WYB5 2073 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 LRRC53A6NM62 1247 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 TXNDC9O14530 226 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 ATP6V1B1P15313 513 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 MARK3P27448 753 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 PUS10Q3MIT2 529 aaKnown RBP10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 TMEM259Q4ZIN3 620 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 SMC6Q96SB8 1091 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 SETDB2Q96T68 719 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 TTC1Q99614 292 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 CCT7Q99832 543 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 TUBGCP2Q9BSJ2 902 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 POLR3CQ9BUI4 534 aaPredicted RBP10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 CADM1Q9BY67 442 aaKnown RBP10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 CABP5Q9NP86 173 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 SLCO1B3Q9NPD5 702 aa10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 LARSQ9P2J5 1176 aaKnown RBP10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 ARPP21Q9UBL0 812 aaPredicted RBP10.35□□□□□ -0.75
PTCHD4-201ENST00000339488 NCAPD2Q15021 1401 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 KANSL1LA0AUZ9 987 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 CFAP69A5D8W1 941 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 KRIT1O00522 736 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 ZFYP08048 801 aaPredicted RBP10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 EIF2B2P49770 351 aaKnown RBP10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 POLR2FP61218 127 aaKnown RBP10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 STMN2Q93045 179 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 GRIP2Q9C0E4 1043 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 GBA3Q9H227 469 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 PTTG2Q9NZH5 202 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 DBF4Q9UBU7 674 aaPredicted RBP10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 CLEC11AQ9Y240 323 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 NOC2LQ9Y3T9 749 aaKnown RBP10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 ROBO2Q9HCK4 1378 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 MYO5AQ9Y4I1 1855 aaKnown RBP10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 A8MU76 341 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 O00370 1275 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 EXOC3O60645 756 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 FGFR1OPO95684 399 aaKnown RBP10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 SRGNP10124 158 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 MTIF2P46199 727 aaKnown RBP10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 SERPINB8P50452 374 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 CTC1Q2NKJ3 1217 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 TAF1BQ53T94 588 aaPredicted RBP10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 B3GNT6Q6ZMB0 384 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 CABP7Q86V35 215 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 CCDC25Q86WR0 208 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 REM2Q8IYK8 340 aaPredicted RBP10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 SCYL3Q8IZE3 742 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 LRRC43Q8N309 656 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 SLC25A41Q8N5S1 370 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 LRRC37BQ96QE4 947 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 PLIN2Q99541 437 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 CCSER1Q9C0I3 900 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 MMRN2Q9H8L6 949 aa10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 TRNAU1APQ9NX07 287 aaKnown RBP10.34□□□□□ -0.75
PTCHD4-201ENST00000339488 RASA4BC9J798 803 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 RASA4O43374 803 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 KCNA4P22459 653 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 TKTP29401 623 aaKnown RBP10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 POLGP54098 1239 aaPredicted RBP10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 CDR2Q01850 454 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 DNAJC3Q13217 504 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 RAPH1Q70E73 1250 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 GLG1Q92896 1179 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 GSDMAQ96QA5 445 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 CCDC134Q9H6E4 229 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 STRN4Q9NRL3 753 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 TUBA8Q9NY65 449 aaPredicted RBP10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 SNX24Q9Y343 169 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 WDR91A4D1P6 747 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 GOLGA8AA7E2F4 631 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 ECE2O60344 883 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 TCEA1P23193 301 aaKnown RBP10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 FOXN2P32314 431 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 SKIV2L2P42285 1042 aaKnown RBP10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 DSG1Q02413 1049 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 CDC16Q13042 620 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 C16orf72Q14CZ0 275 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 CCDC152Q4G0S7 254 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 VSTM1Q6UX27 236 aa10.33□□□□□ -0.76
PTCHD4-201ENST00000339488 CYB5R4Q7L1T6 521 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms