RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 CAND1Q86VP6 1230 aaKnown RBP4.43□□□□□ -1.7
NEDD4-201ENST00000338963 NME9Q86XW9 330 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 MMAAQ8IVH4 418 aaKnown RBP4.43□□□□□ -1.7
NEDD4-201ENST00000338963 ZNF713Q8N859 430 aaPredicted RBP4.43□□□□□ -1.7
NEDD4-201ENST00000338963 LINC00301Q8NCQ3 95 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 SCG3Q8WXD2 468 aaKnown RBP4.43□□□□□ -1.7
NEDD4-201ENST00000338963 JADE3Q92613 823 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 OSBP2Q969R2 916 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 TLCD1Q96CP7 247 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 CARD14Q9BXL6 1004 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 ETNK2Q9NVF9 386 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 SBNO2Q9Y2G9 1366 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 MAGI2Q86UL8 1455 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 ZNF701M0R085 212 aaPredicted RBP4.43□□□□□ -1.7
NEDD4-201ENST00000338963 FOXP2O15409 715 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 MAN1A2O60476 641 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 FBXO21O94952 628 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 CHEK2O96017 543 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 FAM228BP0C875 321 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 PIM1P11309 404 aaPredicted RBP4.43□□□□□ -1.7
NEDD4-201ENST00000338963 PFKFB1P16118 471 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 MMP13P45452 471 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 BNC1Q01954 994 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 KRR1Q13601 381 aaKnown RBP4.43□□□□□ -1.7
NEDD4-201ENST00000338963 SF3B3Q15393 1217 aaKnown RBP4.43□□□□□ -1.7
NEDD4-201ENST00000338963 DNAL1Q4LDG9 190 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 FCRLBQ6BAA4 426 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 RAB3IL1Q8TBN0 382 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 GIPC3Q8TF64 312 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 TTC9Q92623 222 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 FAM149B1Q96BN6 582 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 PGBD4Q96DM1 585 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 AIFM3Q96NN9 605 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 C12orf4Q9NQ89 552 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 VANGL2Q9ULK5 521 aa4.43□□□□□ -1.7
NEDD4-201ENST00000338963 AP1G1O43747 822 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 CAPN15O75808 1086 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 OXSR1O95747 527 aaPredicted RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 NUDT17P0C025 328 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 CHN1P15882 459 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 GNA11P29992 359 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 GSSP48637 474 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 MAGOHP61326 146 aaKnown RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 KCNJ2P63252 427 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 RAD51Q06609 339 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 C2orf54Q08AI8 447 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 TMEM62Q0P6H9 643 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 STOX1Q6ZVD7 989 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 LILRB4Q8NHJ6 448 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 NELFBQ8WX92 580 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 MAGOHBQ96A72 148 aaKnown RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 LRRC1Q9BTT6 524 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 IL1RAPL2Q9NP60 686 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ZDHHC7Q9NXF8 308 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 IFT52Q9Y366 437 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 AP4S1Q9Y587 144 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 RIMS2Q9UQ26 1411 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 FAM237AA0A1B0GTK4 181 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 NUTM2BA6NNL0 878 aaPredicted RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 NUTM2EB1AL46 878 aaPredicted RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 APBB1O00213 710 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ALOX15BO15296 676 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 UFL1O94874 794 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ZNF18P17022 549 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 HSPA6P17066 643 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 CRABP2P29373 138 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 TRIM16LQ309B1 348 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 TRMT5Q32P41 509 aaKnown RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 CENPUQ71F23 418 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 TCAIMQ8N3R3 496 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 FAM13CQ8NE31 585 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 GAB3Q8WWW8 586 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ARHGEF2Q92974 986 aaKnown RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 FNBP1Q96RU3 617 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 DNAJC7Q99615 494 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 CDH19Q9H159 772 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 RUBCNLQ9H714 662 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 EPB41L5Q9HCM4 733 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ABHD10Q9NUJ1 306 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 KLHL3Q9UH77 587 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 XPO7Q9UIA9 1087 aaKnown RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 NFU1Q9UMS0 254 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 EIF4G3O43432 1585 aaKnown RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ZNF839A8K0R7 811 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ERVV-2B6SEH9 535 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 CLPTM1O96005 669 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ATP1A1P05023 1023 aaKnown RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ATP1A3P13637 1013 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ENPP1P22413 925 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ADSLP30566 484 aaPredicted RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 STX2P32856 288 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 PIK3CAP42336 1068 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 RAP1GDS1P52306 607 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 MRPS15P82914 257 aaKnown RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 MAP3K10Q02779 954 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 STK3Q13188 491 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 LRP8Q14114 963 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 CWF19L2Q2TBE0 894 aaKnown RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 RIBC1Q8N443 379 aaPredicted RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 CPLX3Q8WVH0 158 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms