RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 USP17L22D6RA61 530 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 USP17L17D6RBQ6 530 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 USP17L19D6RCP7 530 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 USP17L20D6RJB6 530 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 ECE2O60344 883 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 FAM107AO95990 144 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 CHRNA3P32297 505 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 ABCD1P33897 745 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 USP17L24Q0WX57 530 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 C12orf60Q5U649 245 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 USP17L6PQ6QN14 398 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 UBE2TQ9NPD8 197 aaPredicted RBP12.28□□□□□ -0.44
VPS39-201ENST00000318006 G3BP2Q9UN86 482 aaKnown RBP12.28□□□□□ -0.44
VPS39-201ENST00000318006 TRAF3IP3Q9Y228 551 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 FHOD1Q9Y613 1164 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 USP17L10C9JJH3 530 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 MXI1P50539 228 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 ALCAMQ13740 583 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 RCSD1Q6JBY9 416 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 TMEM154Q6P9G4 183 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 TRMT10CQ7L0Y3 403 aaKnown RBP12.28□□□□□ -0.44
VPS39-201ENST00000318006 CYFIP2Q96F07 1278 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 PCDHB4Q9Y5E5 795 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 CD163L1Q9NR16 1453 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 PVALEFA0A1B0GWK0 134 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 ESYT2A0FGR8 921 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 FAM196BA6NMK8 535 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 AGTP01019 485 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 RNF207Q6ZRF8 634 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 GJD4Q96KN9 370 aaPredicted RBP12.28□□□□□ -0.44
VPS39-201ENST00000318006 KIFC3Q9BVG8 833 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 KRT82Q9NSB4 513 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 TLK1Q9UKI8 766 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 INO80B-WBP1J3KQ70 363 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 PPP1R12AO14974 1030 aaPredicted RBP12.28□□□□□ -0.44
VPS39-201ENST00000318006 PRR29P0C7W0 189 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 PRCPP42785 496 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 KPNA2P52292 529 aaKnown RBP12.28□□□□□ -0.44
VPS39-201ENST00000318006 EPHB1P54762 984 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 SP8Q8IXZ3 490 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 TRIM15Q9C019 465 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 INO80BQ9C086 356 aaPredicted RBP12.28□□□□□ -0.44
VPS39-201ENST00000318006 USP15Q9Y4E8 981 aaPredicted RBP12.28□□□□□ -0.44
VPS39-201ENST00000318006 CFAP69A5D8W1 941 aa12.27□□□□□ -0.44
VPS39-201ENST00000318006 FAM47CQ5HY64 1035 aa12.27□□□□□ -0.44
VPS39-201ENST00000318006 RC3H1Q5TC82 1133 aaKnown RBP12.27□□□□□ -0.44
VPS39-201ENST00000318006 LRRC31Q6UY01 552 aa12.27□□□□□ -0.44
VPS39-201ENST00000318006 APLFQ8IW19 511 aaPredicted RBP12.27□□□□□ -0.44
VPS39-201ENST00000318006 CD248Q9HCU0 757 aa12.27□□□□□ -0.44
VPS39-201ENST00000318006 WARS2Q9UGM6 360 aaKnown RBP12.27□□□□□ -0.44
VPS39-201ENST00000318006 KCNA3P22001 575 aa12.27□□□□□ -0.44
VPS39-201ENST00000318006 GUCY1A2P33402 732 aa12.27□□□□□ -0.44
VPS39-201ENST00000318006 TXNRD1Q16881 649 aa12.27□□□□□ -0.44
VPS39-201ENST00000318006 TEDDM1Q5T9Z0 273 aa12.27□□□□□ -0.44
VPS39-201ENST00000318006 PROM2Q8N271 834 aa12.27□□□□□ -0.44
VPS39-201ENST00000318006 IGDCC4Q8TDY8 1250 aa12.27□□□□□ -0.44
VPS39-201ENST00000318006 DNAJC9Q8WXX5 260 aa12.27□□□□□ -0.44
VPS39-201ENST00000318006 FUT8Q9BYC5 575 aa12.27□□□□□ -0.44
VPS39-201ENST00000318006 CAPN11Q9UMQ6 739 aa12.27□□□□□ -0.44
VPS39-201ENST00000318006 A6NJR5 290 aa12.27□□□□□ -0.45
VPS39-201ENST00000318006 PHF20L1A8MW92 1017 aa12.27□□□□□ -0.45
VPS39-201ENST00000318006 TCP11X1B4DZS4 312 aa12.27□□□□□ -0.45
VPS39-201ENST00000318006 PSAPP07602 524 aa12.27□□□□□ -0.45
VPS39-201ENST00000318006 ARL4CP56559 192 aa12.27□□□□□ -0.45
VPS39-201ENST00000318006 ATP2C1P98194 919 aaPredicted RBP12.27□□□□□ -0.45
VPS39-201ENST00000318006 FAM83BQ5T0W9 1011 aa12.27□□□□□ -0.45
VPS39-201ENST00000318006 AGBL2Q5U5Z8 902 aa12.27□□□□□ -0.45
VPS39-201ENST00000318006 DARS2Q6PI48 645 aaKnown RBP12.27□□□□□ -0.45
VPS39-201ENST00000318006 CEP19Q96LK0 163 aa12.27□□□□□ -0.45
VPS39-201ENST00000318006 FAM20AQ96MK3 541 aa12.27□□□□□ -0.45
VPS39-201ENST00000318006 XPO6Q96QU8 1125 aaKnown RBP12.27□□□□□ -0.45
VPS39-201ENST00000318006 NOC2LQ9Y3T9 749 aaKnown RBP12.27□□□□□ -0.45
VPS39-201ENST00000318006 A0A1B0GTH6 734 aa12.27□□□□□ -0.45
VPS39-201ENST00000318006 NVLO15381 856 aaKnown RBP12.27□□□□□ -0.45
VPS39-201ENST00000318006 DYNLT1P63172 113 aa12.27□□□□□ -0.45
VPS39-201ENST00000318006 KLHL38Q2WGJ6 581 aa12.27□□□□□ -0.45
VPS39-201ENST00000318006 MTERF2Q49AM1 385 aa12.27□□□□□ -0.45
VPS39-201ENST00000318006 TRPM8Q7Z2W7 1104 aa12.27□□□□□ -0.45
VPS39-201ENST00000318006 RAB44Q7Z6P3 723 aaPredicted RBP12.27□□□□□ -0.45
VPS39-201ENST00000318006 RASSF3Q86WH2 238 aa12.27□□□□□ -0.45
VPS39-201ENST00000318006 IL25Q9H293 177 aa12.27□□□□□ -0.45
VPS39-201ENST00000318006 CASP2P42575 452 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 DNAJC24Q6P3W2 148 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 CYB5D1Q6P9G0 228 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 DPP9Q86TI2 863 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 EXOC8Q8IYI6 725 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 STAG2Q8N3U4 1231 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 MCUQ8NE86 351 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 RAD54LQ92698 747 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 RIOK1Q9BRS2 568 aaKnown RBP12.26□□□□□ -0.45
VPS39-201ENST00000318006 ZNF277Q9NRM2 450 aaPredicted RBP12.26□□□□□ -0.45
VPS39-201ENST00000318006 TMEM260Q9NX78 707 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 CCT8L1PA6NM43 557 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 OSBPP22059 807 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 MED21Q13503 144 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 DHX34Q14147 1143 aaKnown RBP12.26□□□□□ -0.45
VPS39-201ENST00000318006 PTGISQ16647 500 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 RSPH3Q86UC2 560 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 LONP2Q86WA8 852 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 SRBD1Q8N5C6 995 aaKnown RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms