RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 SMC2O95347 1197 aa20.02■□□□□ 0.8
HMGA1-201ENST00000311487 EDN1P05305 212 aa20.02■□□□□ 0.8
HMGA1-201ENST00000311487 IBSPP21815 317 aaPredicted RBP20.02■□□□□ 0.8
HMGA1-201ENST00000311487 BMP6P22004 513 aa20.02■□□□□ 0.8
HMGA1-201ENST00000311487 NAMPTP43490 491 aa20.02■□□□□ 0.8
HMGA1-201ENST00000311487 MGAT3Q09327 533 aa20.02■□□□□ 0.8
HMGA1-201ENST00000311487 LRRC8DQ7L1W4 858 aa20.02■□□□□ 0.8
HMGA1-201ENST00000311487 HAUS6Q7Z4H7 955 aa20.02■□□□□ 0.8
HMGA1-201ENST00000311487 KIAA0895Q8NCT3 520 aa20.02■□□□□ 0.8
HMGA1-201ENST00000311487 TIPINQ9BVW5 301 aa20.02■□□□□ 0.8
HMGA1-201ENST00000311487 AGO3Q9H9G7 860 aaKnown RBP20.02■□□□□ 0.8
HMGA1-201ENST00000311487 NOC2LQ9Y3T9 749 aaKnown RBP20.02■□□□□ 0.8
HMGA1-201ENST00000311487 TRPV2Q9Y5S1 764 aa20.02■□□□□ 0.8
HMGA1-201ENST00000311487 PVALEFA0A1B0GWK0 134 aa20.02■□□□□ 0.79
HMGA1-201ENST00000311487 B4GALT5O43286 388 aa20.02■□□□□ 0.79
HMGA1-201ENST00000311487 SELPP16109 830 aa20.02■□□□□ 0.79
HMGA1-201ENST00000311487 CAPN2P17655 700 aa20.02■□□□□ 0.79
HMGA1-201ENST00000311487 SARSP49591 514 aaKnown RBP20.02■□□□□ 0.79
HMGA1-201ENST00000311487 SMTNP53814 917 aa20.02■□□□□ 0.79
HMGA1-201ENST00000311487 NFX1Q12986 1120 aaKnown RBP20.02■□□□□ 0.79
HMGA1-201ENST00000311487 TFDP1Q14186 410 aa20.02■□□□□ 0.79
HMGA1-201ENST00000311487 FAM26FQ5R3K3 315 aa20.02■□□□□ 0.79
HMGA1-201ENST00000311487 CNNM4Q6P4Q7 775 aa20.02■□□□□ 0.79
HMGA1-201ENST00000311487 TAS1R3Q7RTX0 852 aa20.02■□□□□ 0.79
HMGA1-201ENST00000311487 ZNF720Q7Z2F6 126 aa20.02■□□□□ 0.79
HMGA1-201ENST00000311487 NELFCDQ8IXH7 590 aa20.02■□□□□ 0.79
HMGA1-201ENST00000311487 TMEM161BQ8NDZ6 487 aa20.02■□□□□ 0.79
HMGA1-201ENST00000311487 SEZ6LQ9BYH1 1024 aa20.02■□□□□ 0.79
HMGA1-201ENST00000311487 TNRC18O15417 2968 aaPredicted RBP20.01■□□□□ 0.79
HMGA1-201ENST00000311487 MYL1P05976 194 aa20.01■□□□□ 0.79
HMGA1-201ENST00000311487 RAG1P15918 1043 aa20.01■□□□□ 0.79
HMGA1-201ENST00000311487 BFSP2Q13515 415 aa20.01■□□□□ 0.79
HMGA1-201ENST00000311487 SPATA20Q8TB22 786 aa20.01■□□□□ 0.79
HMGA1-201ENST00000311487 CEP290O15078 2479 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 TISP43B9A030 160 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 ASAP2O43150 1006 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 NBNO60934 754 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 GAP43P17677 238 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 CD52P31358 61 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 PHKA2P46019 1235 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 CRYBB1P53674 252 aaPredicted RBP20■□□□□ 0.79
HMGA1-201ENST00000311487 PTENP60484 403 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 MBTD1Q05BQ5 628 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 EHHADHQ08426 723 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 GPNMBQ14956 572 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 PPP2R5AQ15172 486 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 CAGE1Q8TC20 777 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 CPB2Q96IY4 423 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 HTATIP2Q9BUP3 242 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 GCOM2Q9BZD3 368 aaPredicted RBP20■□□□□ 0.79
HMGA1-201ENST00000311487 SCN5AQ14524 2016 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 K7ERI5 159 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 RHOBTB3O94955 611 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 DARSP14868 501 aaKnown RBP20■□□□□ 0.79
HMGA1-201ENST00000311487 EIF4BP23588 611 aaKnown RBP20■□□□□ 0.79
HMGA1-201ENST00000311487 LPIN1Q14693 890 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 ELOA2Q8IYF1 753 aaPredicted RBP20■□□□□ 0.79
HMGA1-201ENST00000311487 GSDMAQ96QA5 445 aa20■□□□□ 0.79
HMGA1-201ENST00000311487 SIP14410 1827 aa19.99■□□□□ 0.79
HMGA1-201ENST00000311487 MAPTP10636 758 aaKnown RBP19.99■□□□□ 0.79
HMGA1-201ENST00000311487 CSF2RAP15509 400 aa19.99■□□□□ 0.79
HMGA1-201ENST00000311487 NCKAP1LP55160 1127 aa19.99■□□□□ 0.79
HMGA1-201ENST00000311487 RPAINQ86UA6 219 aa19.99■□□□□ 0.79
HMGA1-201ENST00000311487 NTPCRQ9BSD7 190 aaKnown RBP19.99■□□□□ 0.79
HMGA1-201ENST00000311487 C17orf75Q9HAS0 396 aa19.99■□□□□ 0.79
HMGA1-201ENST00000311487 ARHGAP28Q9P2N2 729 aa19.99■□□□□ 0.79
HMGA1-201ENST00000311487 PRKAG2Q9UGJ0 569 aa19.99■□□□□ 0.79
HMGA1-201ENST00000311487 RPS6KA5O75582 802 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 TIMP1P01033 207 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 ACRP10323 421 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 HOXD13P35453 343 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 TCTN1Q2MV58 587 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 FBXO47Q5MNV8 452 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 NT5DC1Q5TFE4 455 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 ZNF410Q86VK4 478 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 FAM228AQ86W67 206 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 ZBTB8OSQ8IWT0 167 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 CCDC155Q8N6L0 562 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 SPIRE2Q8WWL2 714 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 BADQ92934 168 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 TSPY26PQ9H489 355 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 OLFML3Q9NRN5 406 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 TBX20Q9UMR3 447 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 ST3GAL5Q9UNP4 418 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 LAMA3Q16787 3333 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 TET1Q8NFU7 2136 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 PITPNM1O00562 1244 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 LETM1O95202 739 aaPredicted RBP19.98■□□□□ 0.79
HMGA1-201ENST00000311487 CD44P16070 742 aaKnown RBP19.98■□□□□ 0.79
HMGA1-201ENST00000311487 TMEM132AQ24JP5 1023 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 CDCA2Q69YH5 1023 aaPredicted RBP19.98■□□□□ 0.79
HMGA1-201ENST00000311487 KLHL10Q6JEL2 608 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 CATSPER4Q7RTX7 472 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 SCFD1Q8WVM8 642 aa19.98■□□□□ 0.79
HMGA1-201ENST00000311487 CCDC47Q96A33 483 aaKnown RBP19.98■□□□□ 0.79
HMGA1-201ENST00000311487 TULP1O00294 542 aaPredicted RBP19.97■□□□□ 0.79
HMGA1-201ENST00000311487 KIAA0355O15063 1070 aa19.97■□□□□ 0.79
HMGA1-201ENST00000311487 PRKCBP05771 671 aa19.97■□□□□ 0.79
HMGA1-201ENST00000311487 PRCPP42785 496 aa19.97■□□□□ 0.79
HMGA1-201ENST00000311487 MORC3Q14149 939 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms