RNA–Protein interactions for RNA: ENST00000309279.11

CHD6-201, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

TSL 1 (best) BASIC

Gene CHD6, Length 1,635 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-201ENST00000309279 LRWD1Q9UFC0 647 aa9.12□□□□□ -0.95
CHD6-201ENST00000309279 FBXO2Q9UK22 296 aaPredicted RBP9.12□□□□□ -0.95
CHD6-201ENST00000309279 RCOR1Q9UKL0 485 aa9.12□□□□□ -0.95
CHD6-201ENST00000309279 ZBTB42B2RXF5 422 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 SPTLC2O15270 562 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 LILRB3O75022 631 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 PRR29P0C7W0 189 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 SMIM10L2AP0DMW4 78 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 SMIM10L2BP0DMW5 78 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 INSRRP14616 1297 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 MARK3P27448 753 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 MARCKSP29966 332 aaPredicted RBP9.11□□□□□ -0.95
CHD6-201ENST00000309279 LONP1P36776 959 aaKnown RBP9.11□□□□□ -0.95
CHD6-201ENST00000309279 TRPC1P48995 793 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 GEMIN4P57678 1058 aaKnown RBP9.11□□□□□ -0.95
CHD6-201ENST00000309279 KRT85P78386 507 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 TLE2Q04725 743 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 GRIN1Q05586 938 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 HIC1Q14526 733 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 GRAMD1BQ3KR37 738 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 TRIM60Q495X7 471 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 XKR3Q5GH77 459 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 PPP2R2DQ66LE6 453 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 HAUS3Q68CZ6 603 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 CATSPER3Q86XQ3 398 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 ERMNQ8TAM6 284 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 CCDC34Q96HJ3 373 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 DYDC2Q96IM9 177 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 FAM167AQ96KS9 214 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 CTAGE1Q96RT6 745 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 SERINC2Q96SA4 455 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 LXNQ9BS40 222 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 MMTAG2Q9BU76 263 aaKnown RBP9.11□□□□□ -0.95
CHD6-201ENST00000309279 TUFT1Q9NNX1 390 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 CHMP5Q9NZZ3 219 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 WRAP73Q9P2S5 460 aaPredicted RBP9.11□□□□□ -0.95
CHD6-201ENST00000309279 MAFFQ9ULX9 164 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 PDE4DIPQ5VU43 2346 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 CEP290O15078 2479 aa9.11□□□□□ -0.95
CHD6-201ENST00000309279 EVPLQ92817 2033 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 COL1A2P08123 1366 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 MBLAC1A4D2B0 266 aaPredicted RBP9.1□□□□□ -0.95
CHD6-201ENST00000309279 ERICH4A6NGS2 130 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 RRN3P2A6NIE6 340 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 B4GALT4O60513 344 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 MED24O75448 989 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 OATP04181 439 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 GNAT1P11488 350 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 XRCC6P12956 609 aaKnown RBP eCLIP9.1□□□□□ -0.95
CHD6-201ENST00000309279 PAX7P23759 505 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 SCNN1AP37088 669 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 ZNF131P52739 623 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 RTP1P59025 263 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 PRKCEQ02156 737 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 CYP4A11Q02928 519 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 FAAP100Q0VG06 881 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 CTTNQ14247 550 aaKnown RBP9.1□□□□□ -0.95
CHD6-201ENST00000309279 STK38Q15208 465 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 TARBP2Q15633 366 aaKnown RBP9.1□□□□□ -0.95
CHD6-201ENST00000309279 ZNF484Q5JVG2 852 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 HYIQ5T013 277 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 MARCH8Q5T0T0 291 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 GDF6Q6KF10 455 aaPredicted RBP9.1□□□□□ -0.95
CHD6-201ENST00000309279 ANO5Q75V66 913 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 TPH2Q8IWU9 490 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 ZNF579Q8NAF0 562 aaKnown RBP9.1□□□□□ -0.95
CHD6-201ENST00000309279 KCNG4Q8TDN1 519 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 PPP1R13LQ8WUF5 828 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 LMBR1Q8WVP7 490 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 RNF34Q969K3 372 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 E2F7Q96AV8 911 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 C12orf49Q9H741 205 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 NRBP2Q9NSY0 501 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 TRMT13Q9NUP7 481 aaKnown RBP9.1□□□□□ -0.95
CHD6-201ENST00000309279 SETD4Q9NVD3 440 aa9.1□□□□□ -0.95
CHD6-201ENST00000309279 LOXHD1Q8IVV2 1947 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 C17orf102A2RUQ5 167 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 PP2D1A8MPX8 630 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 DCDC2CA8MYV0 355 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 PQBP1O60828 265 aaKnown RBP9.09□□□□□ -0.95
CHD6-201ENST00000309279 CDC25AP30304 524 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 HOXC13P31276 330 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 YWHABP31946 246 aaKnown RBP9.09□□□□□ -0.95
CHD6-201ENST00000309279 SSTR3P32745 418 aaPredicted RBP9.09□□□□□ -0.95
CHD6-201ENST00000309279 CHMP4BP1P59074 171 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 PPFIA1Q13136 1202 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 GRIK4Q16099 956 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 ECM1Q16610 540 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 PTGISQ16647 500 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 FAM47CQ5HY64 1035 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 MFSD4BQ5TF39 518 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 KRT79Q5XKE5 535 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 SERINC5Q86VE9 423 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 PLPP6Q8IY26 295 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 CKAP2LQ8IYA6 745 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 MYO1HQ8N1T3 1032 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 CHAMP1Q96JM3 812 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 CCSER1Q9C0I3 900 aa9.09□□□□□ -0.95
CHD6-201ENST00000309279 SCAND2PQ9GZW5 306 aaPredicted RBP9.09□□□□□ -0.95
CHD6-201ENST00000309279 CSRNP2Q9H175 543 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms