RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 TMEM35BQ8NCS4 154 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 CDHR1Q96JP9 859 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 MSTO1Q9BUK6 570 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 LRRC4Q9HBW1 653 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.46■□□□□ 0.55
SYNPO-201ENST00000307662 E9PMD0 336 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 ATICP31939 592 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 CDK8P49336 464 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 ARHGDIAP52565 204 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 ZBTB41Q5SVQ8 909 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 DCAF15Q66K64 600 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 XXYLT1Q8NBI6 393 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 HNRNPLLQ8WVV9 542 aaKnown RBP18.46■□□□□ 0.55
SYNPO-201ENST00000307662 PIGBQ92521 554 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 ADA2Q9NZK5 511 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 PITPNM2Q9BZ72 1349 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 CDC42BPAQ5VT25 1732 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 H3BRJ5 948 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 E2F6O75461 281 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 CCND2P30279 289 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 HNRNPH1P31943 449 aaKnown RBP18.46■□□□□ 0.55
SYNPO-201ENST00000307662 TSTA3Q13630 321 aaPredicted RBP18.46■□□□□ 0.55
SYNPO-201ENST00000307662 RSRC2Q7L4I2 434 aaKnown RBP18.46■□□□□ 0.55
SYNPO-201ENST00000307662 CYFIP2Q96F07 1278 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 ZBTB18Q99592 522 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 PEX3P56589 373 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 NR1I3Q14994 352 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 EPHA10Q5JZY3 1008 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 MS4A14Q96JA4 679 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 GTSE1Q9NYZ3 720 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 EHD2Q9NZN4 543 aa18.46■□□□□ 0.55
SYNPO-201ENST00000307662 RFX1P22670 979 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 ATP2C1P98194 919 aaPredicted RBP18.45■□□□□ 0.54
SYNPO-201ENST00000307662 KRT17Q04695 432 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 MTERF2Q49AM1 385 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 KIAA1755Q5JYT7 1200 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 CNKSR1Q969H4 720 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.45■□□□□ 0.54
SYNPO-201ENST00000307662 SUCLA2Q9P2R7 463 aaPredicted RBP18.45■□□□□ 0.54
SYNPO-201ENST00000307662 FBXO2Q9UK22 296 aaPredicted RBP18.45■□□□□ 0.54
SYNPO-201ENST00000307662 TC2NQ8N9U0 490 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 SLC40A1Q9NP59 571 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 BBOX1O75936 387 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 PAMP19021 973 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 FMR1Q06787 632 aaKnown RBP eCLIP18.45■□□□□ 0.54
SYNPO-201ENST00000307662 TRPM8Q7Z2W7 1104 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 PIGOQ8TEQ8 1089 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 NCLNQ969V3 563 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 NGRNQ9NPE2 291 aaKnown RBP18.45■□□□□ 0.54
SYNPO-201ENST00000307662 ARAP3Q8WWN8 1544 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 FOXP2O15409 715 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 LDHAP00338 332 aaKnown RBP18.45■□□□□ 0.54
SYNPO-201ENST00000307662 MYBL1P10243 752 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 ZFXP17010 805 aaPredicted RBP18.45■□□□□ 0.54
SYNPO-201ENST00000307662 ZNF18P17022 549 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 SERPINB4P48594 390 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 TMEM154Q6P9G4 183 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 NCAPG2Q86XI2 1143 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 C11orf70Q9BRQ4 267 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 SMG5Q9UPR3 1016 aaKnown RBP18.45■□□□□ 0.54
SYNPO-201ENST00000307662 AKT3Q9Y243 479 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 UNC13BO14795 1591 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 PSMD14O00487 310 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 PSAPP07602 524 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 NEK2P51955 445 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 CUL3Q13618 768 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 EFTUD2Q15029 972 aaKnown RBP eCLIP18.45■□□□□ 0.54
SYNPO-201ENST00000307662 SIX6OS1Q8N1H7 587 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 ZNF710Q8N1W2 664 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 C1orf54Q8WWF1 131 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 PSPC1Q8WXF1 523 aaKnown RBP18.45■□□□□ 0.54
SYNPO-201ENST00000307662 EXT2Q93063 718 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 ASNSD1Q9NWL6 643 aa18.45■□□□□ 0.54
SYNPO-201ENST00000307662 GDF11O95390 407 aa18.44■□□□□ 0.54
SYNPO-201ENST00000307662 RABGAP1LQ5R372 815 aa18.44■□□□□ 0.54
SYNPO-201ENST00000307662 GLYCTKQ8IVS8 523 aa18.44■□□□□ 0.54
SYNPO-201ENST00000307662 RPS6KC1Q96S38 1066 aa18.44■□□□□ 0.54
SYNPO-201ENST00000307662 TRABDQ9H4I3 376 aa18.44■□□□□ 0.54
SYNPO-201ENST00000307662 KCNA3P22001 575 aa18.44■□□□□ 0.54
SYNPO-201ENST00000307662 MED21Q13503 144 aa18.44■□□□□ 0.54
SYNPO-201ENST00000307662 PPP6R3Q5H9R7 873 aaPredicted RBP18.44■□□□□ 0.54
SYNPO-201ENST00000307662 RHOT1Q8IXI2 618 aa18.44■□□□□ 0.54
SYNPO-201ENST00000307662 GCOM2Q9BZD3 368 aaPredicted RBP18.44■□□□□ 0.54
SYNPO-201ENST00000307662 NAALADL2Q58DX5 795 aa18.44■□□□□ 0.54
SYNPO-201ENST00000307662 ENAHQ8N8S7 591 aaPredicted RBP18.44■□□□□ 0.54
SYNPO-201ENST00000307662 STX18Q9P2W9 335 aaKnown RBP18.44■□□□□ 0.54
SYNPO-201ENST00000307662 IP6K2Q9UHH9 426 aa18.44■□□□□ 0.54
SYNPO-201ENST00000307662 STRIP2Q9ULQ0 834 aa18.44■□□□□ 0.54
SYNPO-201ENST00000307662 PPEF1O14829 653 aaPredicted RBP18.44■□□□□ 0.54
SYNPO-201ENST00000307662 HOXA13P31271 388 aaPredicted RBP18.44■□□□□ 0.54
SYNPO-201ENST00000307662 SOX5P35711 763 aa18.44■□□□□ 0.54
SYNPO-201ENST00000307662 ANKRD40Q6AI12 368 aa18.44■□□□□ 0.54
SYNPO-201ENST00000307662 RAD9BQ6WBX8 426 aa18.44■□□□□ 0.54
SYNPO-201ENST00000307662 PASD1Q8IV76 773 aa18.44■□□□□ 0.54
SYNPO-201ENST00000307662 INPP5FQ9Y2H2 1132 aa18.44■□□□□ 0.54
SYNPO-201ENST00000307662 CSADQ9Y600 493 aa18.44■□□□□ 0.54
SYNPO-201ENST00000307662 PNPLA6Q8IY17 1366 aa18.43■□□□□ 0.54
SYNPO-201ENST00000307662 FAM107AO95990 144 aa18.43■□□□□ 0.54
SYNPO-201ENST00000307662 KCNA4P22459 653 aa18.43■□□□□ 0.54
SYNPO-201ENST00000307662 PMLP29590 882 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms