RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 PLEKHA4Q9H4M7 779 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 SNRKQ9NRH2 765 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 CAPN11Q9UMQ6 739 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 PLAGL2Q9UPG8 496 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 LSM8O95777 96 aaKnown RBP4.28□□□□□ -1.73
USH2A-201ENST00000307340 APOA1P02647 267 aa4.28□□□□□ -1.73
USH2A-201ENST00000307340 ADAM9Q13443 819 aa4.28□□□□□ -1.73
USH2A-201ENST00000307340 LRCH2Q5VUJ6 765 aa4.28□□□□□ -1.73
USH2A-201ENST00000307340 FKBP1CQ5VVH2 108 aa4.28□□□□□ -1.73
USH2A-201ENST00000307340 KRT40Q6A162 431 aa4.28□□□□□ -1.73
USH2A-201ENST00000307340 AP1M1Q9BXS5 423 aa4.28□□□□□ -1.73
USH2A-201ENST00000307340 ERBB2P04626 1255 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 RPSAP08865 295 aaKnown RBP4.27□□□□□ -1.73
USH2A-201ENST00000307340 DNAJC3Q13217 504 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 SLC18A3Q16572 532 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 PRR16Q569H4 304 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 SLC10A4Q96EP9 437 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 KCTD5Q9NXV2 234 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 RIPOR2Q9Y4F9 1068 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 BAZ2BQ9UIF8 2168 aaKnown RBP4.27□□□□□ -1.73
USH2A-201ENST00000307340 MAGEB2O15479 319 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 IL18RAPO95256 599 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 ACADSP16219 412 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 EAPPQ56P03 285 aaPredicted RBP4.27□□□□□ -1.73
USH2A-201ENST00000307340 PRMT9Q6P2P2 845 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 C16orf89Q6UX73 402 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 DLG3Q92796 817 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 SNF8Q96H20 258 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 TNIP3Q96KP6 325 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 MED15Q96RN5 788 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 SPATA31A6Q5VVP1 1343 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 IGSF9BQ9UPX0 1349 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 LAMA4Q16363 1823 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 TLR3O15455 904 aaKnown RBP4.27□□□□□ -1.73
USH2A-201ENST00000307340 CCND2P30279 289 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 KCNQ4P56696 695 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 DPP8Q6V1X1 898 aaPredicted RBP4.27□□□□□ -1.73
USH2A-201ENST00000307340 MYCT1Q8N699 235 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 GCNT4Q9P109 453 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 DNPEPQ9ULA0 475 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 BACH1O14867 736 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 CD4P01730 458 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 NPR1P16066 1061 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 CDK7P50613 346 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 ATP2C1P98194 919 aaPredicted RBP4.27□□□□□ -1.73
USH2A-201ENST00000307340 MTFR1Q15390 333 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 MUC13Q9H3R2 512 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 DSEQ9UL01 958 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 ZNF804BA4D1E1 1349 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 ZNF532Q9HCE3 1301 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 WDR64B1ANS9 1081 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 H3BNX3 289 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 CTIFO43310 598 aaKnown RBP4.27□□□□□ -1.73
USH2A-201ENST00000307340 SMARCB1Q12824 385 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 ME3Q16798 604 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 CERKLQ49MI3 558 aaPredicted RBP4.27□□□□□ -1.73
USH2A-201ENST00000307340 STAG2Q8N3U4 1231 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 ERGIC2Q96RQ1 377 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 PEAK1Q9H792 1746 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 RABL2AQ9UBK7 228 aaPredicted RBP4.27□□□□□ -1.73
USH2A-201ENST00000307340 RABL2BQ9UNT1 228 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 ARL2BPQ9Y2Y0 163 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 PCDHGC5Q9Y5F6 944 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 RAD54BQ9Y620 910 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 SQORQ9Y6N5 450 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 TMEM94Q12767 1356 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 GAKO14976 1311 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 LPXNO60711 386 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 S100BP04271 92 aaPredicted RBP4.27□□□□□ -1.73
USH2A-201ENST00000307340 POLD2P49005 469 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 MTERF2Q49AM1 385 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 ZFRQ96KR1 1074 aaKnown RBP4.27□□□□□ -1.73
USH2A-201ENST00000307340 ZC4H2Q9NQZ6 224 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 DGAT1O75907 488 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 HTR7P34969 479 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 AP1B1Q10567 949 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 TERF2Q15554 542 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 HNRNPDLO14979 420 aaKnown RBP4.27□□□□□ -1.73
USH2A-201ENST00000307340 ZBTB22O15209 634 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 AIF1P55008 147 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 PHEXP78562 749 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 MFSD14BQ5SR56 506 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 GJD3Q8N144 294 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 MYO1HQ8N1T3 1032 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 SAC3D1A6NKF1 404 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 CAPN9O14815 690 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 VPS4BO75351 444 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 GDF11O95390 407 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 MARCKSP29966 332 aaPredicted RBP4.27□□□□□ -1.73
USH2A-201ENST00000307340 MMEL1Q495T6 779 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 GALNT18Q6P9A2 607 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 PASD1Q8IV76 773 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 AGGF1Q8N302 714 aaeCLIP4.27□□□□□ -1.73
USH2A-201ENST00000307340 XPO4Q9C0E2 1151 aaKnown RBP4.27□□□□□ -1.73
USH2A-201ENST00000307340 SYNDIG1Q9H7V2 258 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 ZNF148Q9UQR1 794 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 HSPA9P38646 679 aaKnown RBP4.27□□□□□ -1.73
USH2A-201ENST00000307340 ANKRD13CQ8N6S4 541 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 TMEM35BQ8NCS4 154 aa4.27□□□□□ -1.73
USH2A-201ENST00000307340 JARID2Q92833 1246 aaPredicted RBP4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms