RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 ZNF507Q8TCN5 953 aa11.03□□□□□ -0.64
CLIP1-201ENST00000302528 DNAJC7Q99615 494 aa11.03□□□□□ -0.64
CLIP1-201ENST00000302528 ZFYVE1Q9HBF4 777 aa11.03□□□□□ -0.64
CLIP1-201ENST00000302528 LDHAP00338 332 aaKnown RBP11.03□□□□□ -0.64
CLIP1-201ENST00000302528 CENPAP49450 140 aa11.03□□□□□ -0.64
CLIP1-201ENST00000302528 SKIV2LQ15477 1246 aaKnown RBP11.03□□□□□ -0.64
CLIP1-201ENST00000302528 ALKBH5Q6P6C2 394 aaKnown RBP11.03□□□□□ -0.64
CLIP1-201ENST00000302528 USE1Q9NZ43 259 aa11.03□□□□□ -0.64
CLIP1-201ENST00000302528 EIF4E1BA6NMX2 242 aaKnown RBP11.03□□□□□ -0.64
CLIP1-201ENST00000302528 PIK3R2O00459 728 aa11.03□□□□□ -0.64
CLIP1-201ENST00000302528 HUS1O60921 280 aa11.03□□□□□ -0.64
CLIP1-201ENST00000302528 FGAP02671 866 aa11.03□□□□□ -0.64
CLIP1-201ENST00000302528 CUL3Q13618 768 aa11.03□□□□□ -0.64
CLIP1-201ENST00000302528 SPON2Q9BUD6 331 aa11.03□□□□□ -0.64
CLIP1-201ENST00000302528 THAP9Q9H5L6 903 aa11.03□□□□□ -0.64
CLIP1-201ENST00000302528 RWDD2AQ9UIY3 292 aa11.03□□□□□ -0.64
CLIP1-201ENST00000302528 PTPRTO14522 1441 aa11.03□□□□□ -0.64
CLIP1-201ENST00000302528 FAM107AO95990 144 aa11.03□□□□□ -0.64
CLIP1-201ENST00000302528 INPP5AQ14642 412 aa11.03□□□□□ -0.64
CLIP1-201ENST00000302528 NAALADL2Q58DX5 795 aa11.03□□□□□ -0.64
CLIP1-201ENST00000302528 TADA1Q96BN2 335 aa11.03□□□□□ -0.64
CLIP1-201ENST00000302528 EML4Q9HC35 981 aaKnown RBP11.03□□□□□ -0.64
CLIP1-201ENST00000302528 NRBP1Q9UHY1 535 aa11.03□□□□□ -0.64
CLIP1-201ENST00000302528 MAP3K19Q56UN5 1328 aa11.02□□□□□ -0.64
CLIP1-201ENST00000302528 ZFYVE9O95405 1425 aa11.02□□□□□ -0.64
CLIP1-201ENST00000302528 KDM5AP29375 1690 aaKnown RBP11.02□□□□□ -0.64
CLIP1-201ENST00000302528 C16orf96A6NNT2 1141 aa11.02□□□□□ -0.64
CLIP1-201ENST00000302528 SUPT3HB4E1H0 165 aa11.02□□□□□ -0.64
CLIP1-201ENST00000302528 GOLGA8RI6L899 631 aa11.02□□□□□ -0.64
CLIP1-201ENST00000302528 NDUFA10O95299 355 aa11.02□□□□□ -0.64
CLIP1-201ENST00000302528 GDF11O95390 407 aa11.02□□□□□ -0.64
CLIP1-201ENST00000302528 BMP3P12645 472 aa11.02□□□□□ -0.64
CLIP1-201ENST00000302528 PDIA3P30101 505 aaKnown RBP11.02□□□□□ -0.64
CLIP1-201ENST00000302528 CHRNA3P32297 505 aa11.02□□□□□ -0.64
CLIP1-201ENST00000302528 PTH1RQ03431 593 aa11.02□□□□□ -0.64
CLIP1-201ENST00000302528 DMTNQ08495 405 aa11.02□□□□□ -0.64
CLIP1-201ENST00000302528 CCDC15Q0P6D6 951 aa11.02□□□□□ -0.64
CLIP1-201ENST00000302528 PSMD2Q13200 908 aa11.02□□□□□ -0.64
CLIP1-201ENST00000302528 SLC39A14Q15043 492 aa11.02□□□□□ -0.64
CLIP1-201ENST00000302528 ITPRIPL1Q6GPH6 555 aa11.02□□□□□ -0.64
CLIP1-201ENST00000302528 TMEM35BQ8NCS4 154 aa11.02□□□□□ -0.64
CLIP1-201ENST00000302528 GFM2Q969S9 779 aaKnown RBP11.02□□□□□ -0.64
CLIP1-201ENST00000302528 TUBGCP3Q96CW5 907 aa11.02□□□□□ -0.64
CLIP1-201ENST00000302528 ABCB6Q9NP58 842 aa11.02□□□□□ -0.64
CLIP1-201ENST00000302528 HPS4Q9NQG7 708 aa11.02□□□□□ -0.64
CLIP1-201ENST00000302528 IKBKBO14920 756 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 PLA2G4BP0C869 781 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 CYP27A1Q02318 531 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 HEATR6Q6AI08 1181 aaKnown RBP11.02□□□□□ -0.65
CLIP1-201ENST00000302528 ADCK2Q7Z695 626 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 DCUN1D1Q96GG9 259 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 EXOSC4Q9NPD3 245 aaKnown RBP11.02□□□□□ -0.65
CLIP1-201ENST00000302528 PAPOLBQ9NRJ5 636 aaKnown RBP11.02□□□□□ -0.65
CLIP1-201ENST00000302528 TOPORSQ9NS56 1045 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-201ENST00000302528 SYNGAP1Q96PV0 1343 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 ADCY9O60503 1353 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 ANGPT2O15123 496 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 HMGB3O15347 200 aaKnown RBP11.02□□□□□ -0.65
CLIP1-201ENST00000302528 ASMTLO95671 621 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 DEFA1P59665 94 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 DEFA3P59666 94 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 CAV1Q03135 178 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 E4F1Q66K89 784 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-201ENST00000302528 TEX2Q8IWB9 1127 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 CATSPER1Q8NEC5 780 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 PRDM5Q9NQX1 630 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-201ENST00000302528 CNOT8Q9UFF9 292 aaKnown RBP11.02□□□□□ -0.65
CLIP1-201ENST00000302528 LCMT1Q9UIC8 334 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 MEFVO15553 781 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-201ENST00000302528 RALBP11234 206 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 PRKCQQ04759 706 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.02□□□□□ -0.65
CLIP1-201ENST00000302528 RNF26Q9BY78 433 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-201ENST00000302528 OLFML3Q9NRN5 406 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 MAD2L2Q9UI95 211 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 TTC7AQ9ULT0 858 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-201ENST00000302528 ABT1Q9ULW3 272 aaKnown RBP11.02□□□□□ -0.65
CLIP1-201ENST00000302528 STAP1Q9ULZ2 295 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 RIMS2Q9UQ26 1411 aa11.02□□□□□ -0.65
CLIP1-201ENST00000302528 SYNMO15061 1565 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 ASAP2O43150 1006 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 HMOX2P30519 316 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 RAD23BP54727 409 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 ABCE1P61221 599 aaKnown RBP11.01□□□□□ -0.65
CLIP1-201ENST00000302528 KRT31Q15323 416 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 RFX8Q6ZV50 586 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 NLRP9Q7RTR0 991 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 BBS7Q8IWZ6 715 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 FBXO18Q8NFZ0 1043 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 RMDN1Q96DB5 314 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 STAMBPL1Q96FJ0 436 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 PIGSQ96S52 555 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 SLC13A1Q9BZW2 595 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 MLXIPLQ9NP71 852 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 NEURL1BA8MQ27 555 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 MYO1GB0I1T2 1018 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 hCG_1984214I3L0E3 225 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 FMNL1O95466 1100 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-201ENST00000302528 CCNE1P24864 410 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 RAB14P61106 215 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms