RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 SPEF2Q9C093 1822 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 TMEM120BA0PK00 339 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 NOL4O94818 638 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 PENKP01210 267 aaPredicted RBP9.44□□□□□ -0.9
VAPB-201ENST00000265619 VARSP26640 1264 aaKnown RBP9.44□□□□□ -0.9
VAPB-201ENST00000265619 GIT2Q14161 759 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 ZRSR2Q15696 482 aaKnown RBP9.44□□□□□ -0.9
VAPB-201ENST00000265619 AADACL2Q6P093 401 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 PIK3AP1Q6ZUJ8 805 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 TRIM22Q8IYM9 498 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 GLIS3Q8NEA6 775 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 SH3RF3Q8TEJ3 882 aaPredicted RBP9.44□□□□□ -0.9
VAPB-201ENST00000265619 P2RX5Q93086 422 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 ABTB1Q969K4 478 aaPredicted RBP9.44□□□□□ -0.9
VAPB-201ENST00000265619 PGM2Q96G03 612 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 MXD3Q9BW11 206 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 PAPPAQ13219 1627 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 MAGEB6P1A0A0J9YX57 407 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 GOLGA6L10A0A0M3HER8 536 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 FAM196BA6NMK8 535 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 PSMA7O14818 248 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 PLSCR1O15162 318 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 ZFYP08048 801 aaPredicted RBP9.44□□□□□ -0.9
VAPB-201ENST00000265619 CHRNA5P30532 468 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 RCN1Q15293 331 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 TSNAXIP1Q2TAA8 658 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 VWA3BQ502W6 1294 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 RFX8Q6ZV50 586 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 SEC14L1Q92503 715 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 DYDC2Q96IM9 177 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 TMEM87BQ96K49 555 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 ANKRD27Q96NW4 1050 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 LRMDAQ9H2I8 198 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 DHX36Q9H2U1 1008 aaKnown RBP9.44□□□□□ -0.9
VAPB-201ENST00000265619 KRT82Q9NSB4 513 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 TUBGCP4Q9UGJ1 667 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 LRCH1Q9Y2L9 728 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 WASF2Q9Y6W5 498 aa9.44□□□□□ -0.9
VAPB-201ENST00000265619 A0A0J9YVX5 310 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 BOLA2-SMG1P6H3BVE0 249 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 FOXN2P32314 431 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 KRT2P35908 639 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 ISLR2Q6UXK2 745 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 V9GY48 417 aaPredicted RBP9.43□□□□□ -0.9
VAPB-201ENST00000265619 SPDYE16A6NNV3 312 aaPredicted RBP9.43□□□□□ -0.9
VAPB-201ENST00000265619 RBAK-RBAKDNI3L0D1 243 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 TBX10O75333 385 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 LYNP07948 512 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 CYP11B2P19099 503 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 PICALMQ13492 652 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 RC3H1Q5TC82 1133 aaKnown RBP9.43□□□□□ -0.9
VAPB-201ENST00000265619 DAAM2Q86T65 1068 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 KIAA0895Q8NCT3 520 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 MTA3Q9BTC8 594 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 NSRP1Q9H0G5 558 aaKnown RBP9.43□□□□□ -0.9
VAPB-201ENST00000265619 PABPC3Q9H361 631 aaKnown RBP9.43□□□□□ -0.9
VAPB-201ENST00000265619 RMND1Q9NWS8 449 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 TDRKHQ9Y2W6 561 aaKnown RBP9.43□□□□□ -0.9
VAPB-201ENST00000265619 NUDT17P0C025 328 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 DESP17661 470 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 FGFR2P21802 821 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 GPSM2P81274 684 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 SFSWAPQ12872 951 aaKnown RBP9.43□□□□□ -0.9
VAPB-201ENST00000265619 PABPC4Q13310 644 aaKnown RBP eCLIP9.43□□□□□ -0.9
VAPB-201ENST00000265619 MYBPC2Q14324 1141 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 EXOC3L4Q17RC7 722 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 HOOK3Q86VS8 718 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 LRRC57Q8N9N7 239 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 EIF1ADQ8N9N8 165 aaKnown RBP9.43□□□□□ -0.9
VAPB-201ENST00000265619 FANCBQ8NB91 859 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 WASF1Q92558 559 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 NMD3Q96D46 503 aaKnown RBP9.43□□□□□ -0.9
VAPB-201ENST00000265619 NACAP1Q9BZK3 213 aa9.43□□□□□ -0.9
VAPB-201ENST00000265619 ANKRD63C9JTQ0 380 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 PGRMC1O00264 195 aaKnown RBP9.42□□□□□ -0.9
VAPB-201ENST00000265619 RHOBTB3O94955 611 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 CCNE1P24864 410 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 LIFRP42702 1097 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 SCNN1DP51172 638 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 USP11P51784 963 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 ACSBG2Q5FVE4 666 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 TNFAIP8L3Q5GJ75 292 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 DENND2CQ68D51 928 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 CEP128Q6ZU80 1094 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 RIBC1Q8N443 379 aaPredicted RBP9.42□□□□□ -0.9
VAPB-201ENST00000265619 NEK9Q8TD19 979 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 RASGRP4Q8TDF6 673 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 ACTRT1Q8TDG2 376 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 LRRC8CQ8TDW0 803 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.42□□□□□ -0.95e-8■■■■■ 65.3
VAPB-201ENST00000265619 TAF4BQ92750 862 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 HAPLN3Q96S86 360 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.42□□□□□ -0.9
VAPB-201ENST00000265619 DISC1Q9NRI5 854 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 TMCO1Q9UM00 188 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 E7ENQ6 273 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 ASLP04424 464 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 ITGA2BP08514 1039 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 CYP2D6P10635 497 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 POLR2FP61218 127 aaKnown RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms