RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 PDE1CQ14123 709 aaPredicted RBP11.49□□□□□ -0.57
CD44-201ENST00000263398 CDO1Q16878 200 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 KLHL38Q2WGJ6 581 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 PPP6R3Q5H9R7 873 aaPredicted RBP11.49□□□□□ -0.57
CD44-201ENST00000263398 ZNF746Q6NUN9 644 aaPredicted RBP11.49□□□□□ -0.57
CD44-201ENST00000263398 NLRP14Q86W24 1093 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 TTLL6Q8N841 843 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 NSUN6Q8TEA1 469 aaKnown RBP11.49□□□□□ -0.57
CD44-201ENST00000263398 SPDL1Q96EA4 605 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 C7orf25Q9BPX7 421 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 IL25Q9H293 177 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 CACYBPQ9HB71 228 aaKnown RBP11.49□□□□□ -0.57
CD44-201ENST00000263398 FBXO40Q9UH90 709 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 TRIM49P0CI25 452 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 TRIM49CP0CI26 452 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 AKR1B1P15121 316 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 NCF2P19878 526 aaPredicted RBP11.48□□□□□ -0.57
CD44-201ENST00000263398 STAT3P40763 770 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 ESRRGP62508 458 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 STXBP2Q15833 593 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 ICE2Q659A1 982 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 CCDC137Q6PK04 289 aaKnown RBP11.48□□□□□ -0.57
CD44-201ENST00000263398 USP49Q70CQ1 688 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 ATP6V1E2Q96A05 226 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 RNF25Q96BH1 459 aaPredicted RBP11.48□□□□□ -0.57
CD44-201ENST00000263398 EIF2AK1Q9BQI3 630 aaKnown RBP11.48□□□□□ -0.57
CD44-201ENST00000263398 LRRC1Q9BTT6 524 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 FBXL5Q9UKA1 691 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 CTIFO43310 598 aaKnown RBP11.48□□□□□ -0.57
CD44-201ENST00000263398 S100BP04271 92 aaPredicted RBP11.48□□□□□ -0.57
CD44-201ENST00000263398 HDLBPQ00341 1268 aaKnown RBP11.48□□□□□ -0.57
CD44-201ENST00000263398 ART3Q13508 389 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 EPHA7Q15375 998 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 ARL13BQ3SXY8 428 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 TRIM72Q6ZMU5 477 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 RHOT1Q8IXI2 618 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 ENGASEQ8NFI3 743 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 HSPH1Q92598 858 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 VPS39Q96JC1 886 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 LXNQ9BS40 222 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 ASNSD1Q9NWL6 643 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 GYG2O15488 501 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 LMNAP02545 664 aaKnown RBP11.48□□□□□ -0.57
CD44-201ENST00000263398 C4orf50Q6ZRC1 276 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 PASD1Q8IV76 773 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 PRPF38AQ8NAV1 312 aaKnown RBP11.48□□□□□ -0.57
CD44-201ENST00000263398 N4BP2L2Q92802 583 aaPredicted RBP11.48□□□□□ -0.57
CD44-201ENST00000263398 CHMP6Q96FZ7 201 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 PPARGC1AQ9UBK2 798 aaKnown RBP11.48□□□□□ -0.57
CD44-201ENST00000263398 AMACRQ9UHK6 382 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 CPSF3Q9UKF6 684 aaKnown RBP11.48□□□□□ -0.57
CD44-201ENST00000263398 SUGT1Q9Y2Z0 365 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 PREX1Q8TCU6 1659 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 KRT7P08729 469 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 PSMC5P62195 406 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 ZNF699Q32M78 642 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 RAD9BQ6WBX8 426 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 ABI1Q8IZP0 508 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 GIMAP8Q8ND71 665 aaPredicted RBP11.48□□□□□ -0.57
CD44-201ENST00000263398 OR6B3Q8NGW1 331 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 ANKRD7Q92527 254 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 RNPC3Q96LT9 517 aaKnown RBP11.48□□□□□ -0.57
CD44-201ENST00000263398 TMEM60Q9H2L4 133 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 ANGPTL3Q9Y5C1 460 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 EMSYQ7Z589 1322 aa11.48□□□□□ -0.57
CD44-201ENST00000263398 MGEA5O60502 916 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 LPXNO60711 386 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 MARK3P27448 753 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 STK4Q13043 487 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 FBXL13Q8NEE6 735 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 ARHGEF1Q92888 912 aaKnown RBP11.47□□□□□ -0.57
CD44-201ENST00000263398 DRC3Q9H069 523 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 FAM96AQ9H5X1 160 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 TTC7AQ9ULT0 858 aaPredicted RBP11.47□□□□□ -0.57
CD44-201ENST00000263398 TAF6LQ9Y6J9 622 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 TNS3Q68CZ2 1445 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 PPP1R37O75864 691 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 CTDNEP1O95476 244 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 MYBL1P10243 752 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 HAUS6Q7Z4H7 955 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 ELOA2Q8IYF1 753 aaPredicted RBP11.47□□□□□ -0.57
CD44-201ENST00000263398 SEPT12Q8IYM1 358 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 PSPC1Q8WXF1 523 aaKnown RBP11.47□□□□□ -0.57
CD44-201ENST00000263398 RAVER2Q9HCJ3 691 aaKnown RBP11.47□□□□□ -0.57
CD44-201ENST00000263398 MAGED2Q9UNF1 606 aaPredicted RBP11.47□□□□□ -0.57
CD44-201ENST00000263398 SPECC1L-ADORA2AF8WAN1 911 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 CEP55Q53EZ4 464 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 MYLK4Q86YV6 388 aaPredicted RBP11.47□□□□□ -0.57
CD44-201ENST00000263398 THOC1Q96FV9 657 aaKnown RBP11.47□□□□□ -0.57
CD44-201ENST00000263398 LRRC37BQ96QE4 947 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 TRAIPQ9BWF2 469 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 CYP26B1Q9NR63 512 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 RNF146Q9NTX7 359 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 AGPAT5Q9NUQ2 364 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 HOXC10Q9NYD6 342 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 UBE4BO95155 1302 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 TYW5A2RUC4 315 aaKnown RBP11.47□□□□□ -0.57
CD44-201ENST00000263398 RFX5P48382 616 aaPredicted RBP11.47□□□□□ -0.57
CD44-201ENST00000263398 SF3B3Q15393 1217 aaKnown RBP11.47□□□□□ -0.57
CD44-201ENST00000263398 TAF1BQ53T94 588 aaPredicted RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms