RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 PRR5LQ6MZQ0 368 aa13.41□□□□□ -0.26
NUP88-201ENST00000225696 ZNF746Q6NUN9 644 aaPredicted RBP13.41□□□□□ -0.26
NUP88-201ENST00000225696 TCP11Q8WWU5 503 aa13.41□□□□□ -0.26
NUP88-201ENST00000225696 PGM2Q96G03 612 aa13.41□□□□□ -0.26
NUP88-201ENST00000225696 C8orf37Q96NL8 207 aa13.41□□□□□ -0.26
NUP88-201ENST00000225696 EIF2AK1Q9BQI3 630 aaKnown RBP13.41□□□□□ -0.26
NUP88-201ENST00000225696 ACP6Q9NPH0 428 aa13.41□□□□□ -0.26
NUP88-201ENST00000225696 USP40Q9NVE5 1235 aa13.41□□□□□ -0.26
NUP88-201ENST00000225696 SLC12A4Q9UP95 1085 aa13.41□□□□□ -0.26
NUP88-201ENST00000225696 PTPN22Q9Y2R2 807 aa13.41□□□□□ -0.26
NUP88-201ENST00000225696 PCDHAC2Q9Y5I4 1007 aa13.41□□□□□ -0.26
NUP88-201ENST00000225696 FRMPD4Q14CM0 1322 aa13.4□□□□□ -0.26
NUP88-201ENST00000225696 GTPBP10A4D1E9 387 aaKnown RBP13.4□□□□□ -0.26
NUP88-201ENST00000225696 ATMINO43313 823 aaPredicted RBP13.4□□□□□ -0.26
NUP88-201ENST00000225696 TBCAO75347 108 aaKnown RBP13.4□□□□□ -0.26
NUP88-201ENST00000225696 EEF2P13639 858 aaKnown RBP13.4□□□□□ -0.26
NUP88-201ENST00000225696 LMNB1P20700 586 aa13.4□□□□□ -0.26
NUP88-201ENST00000225696 KCNJ1P48048 391 aa13.4□□□□□ -0.26
NUP88-201ENST00000225696 ARMC9Q7Z3E5 817 aa13.4□□□□□ -0.26
NUP88-201ENST00000225696 TBC1D1Q86TI0 1168 aaPredicted RBP13.4□□□□□ -0.26
NUP88-201ENST00000225696 HOOK3Q86VS8 718 aa13.4□□□□□ -0.26
NUP88-201ENST00000225696 MYCT1Q8N699 235 aa13.4□□□□□ -0.26
NUP88-201ENST00000225696 BANK1Q8NDB2 785 aa13.4□□□□□ -0.26
NUP88-201ENST00000225696 FIZ1Q96SL8 496 aa13.4□□□□□ -0.26
NUP88-201ENST00000225696 INTS2Q9H0H0 1204 aaKnown RBP13.4□□□□□ -0.26
NUP88-201ENST00000225696 NOD2Q9HC29 1040 aa13.4□□□□□ -0.26
NUP88-201ENST00000225696 BAIAP2L1Q9UHR4 511 aa13.4□□□□□ -0.26
NUP88-201ENST00000225696 TRPC6Q9Y210 931 aa13.4□□□□□ -0.26
NUP88-201ENST00000225696 RABGAP1Q9Y3P9 1069 aa13.4□□□□□ -0.26
NUP88-201ENST00000225696 CD2APQ9Y5K6 639 aa13.4□□□□□ -0.26
NUP88-201ENST00000225696 C6orf229H3BNL8 230 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 RGL2O15211 777 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 RGS16O15492 202 aaPredicted RBP13.39□□□□□ -0.27
NUP88-201ENST00000225696 VIMP08670 466 aaKnown RBP13.39□□□□□ -0.27
NUP88-201ENST00000225696 GHRP10912 638 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 NF2P35240 595 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 PSMC2P35998 433 aaKnown RBP13.39□□□□□ -0.27
NUP88-201ENST00000225696 DLG4P78352 724 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 MEX3CQ5U5Q3 659 aaKnown RBP13.39□□□□□ -0.27
NUP88-201ENST00000225696 OTUD6AQ7L8S5 288 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 SIAH1Q8IUQ4 282 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 RPGRQ92834 1020 aaKnown RBP13.39□□□□□ -0.27
NUP88-201ENST00000225696 BTBD6Q96KE9 485 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 CCDC113Q9H0I3 377 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 INTS9Q9NV88 658 aaKnown RBP13.39□□□□□ -0.27
NUP88-201ENST00000225696 CCNL1Q9UK58 526 aaPredicted RBP13.39□□□□□ -0.27
NUP88-201ENST00000225696 L3MBTL1Q9Y468 752 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 ATP8B3O60423 1300 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 TISP43B9A030 160 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 CHMP2AO43633 222 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 CLTAP09496 248 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 TNFAIP3P21580 790 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 KCNJ2P63252 427 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 Q4G0T1 1027 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 MSL1Q68DK7 614 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 TLDC1Q6P9B6 456 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 PNMA8AQ86V59 439 aaPredicted RBP13.39□□□□□ -0.27
NUP88-201ENST00000225696 ERMNQ8TAM6 284 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 FAM212AQ96EL1 285 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 STAMBPL1Q96FJ0 436 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 DDX23Q9BUQ8 820 aaKnown RBP13.39□□□□□ -0.27
NUP88-201ENST00000225696 MLXIPLQ9NP71 852 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 WRAP73Q9P2S5 460 aaPredicted RBP13.39□□□□□ -0.27
NUP88-201ENST00000225696 FOCADQ5VW36 1801 aa13.39□□□□□ -0.27
NUP88-201ENST00000225696 GOLGA6L10A0A0M3HER8 536 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 CCDC169A6NNP5 214 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 TP73O15350 636 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 ASAP2O43150 1006 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 FTLP02792 175 aaPredicted RBP13.38□□□□□ -0.27
NUP88-201ENST00000225696 PYGMP11217 842 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 ATP2B4P23634 1241 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 AUHQ13825 339 aaKnown RBP13.38□□□□□ -0.27
NUP88-201ENST00000225696 CDC42EP5Q6NZY7 148 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 TPH2Q8IWU9 490 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 LMO3Q8TAP4 145 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 MGARPQ8TDB4 240 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 KAT5Q92993 513 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 HOOK2Q96ED9 719 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 CRAMP1Q96RY5 1269 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 OLFML3Q9NRN5 406 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 DONSONQ9NYP3 566 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 APEX2Q9UBZ4 518 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 USP21Q9UK80 565 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 ADAMTSL1Q8N6G6 1762 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 ANKRD62A6NC57 917 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 FAM187AA6NFU0 413 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 RIPK2O43353 540 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 PHF2O75151 1096 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 SLITRK3O94933 977 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 EYA4O95677 639 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 PEX5P50542 639 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 DHX34Q14147 1143 aaKnown RBP13.38□□□□□ -0.27
NUP88-201ENST00000225696 CNGA2Q16280 664 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 LONRF1Q17RB8 773 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 SPDYCQ5MJ68 293 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 SLFN13Q68D06 897 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 CCDC137Q6PK04 289 aaKnown RBP13.38□□□□□ -0.27
NUP88-201ENST00000225696 C1orf186Q6ZWK4 172 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 TRPM8Q7Z2W7 1104 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 CCDC25Q86WR0 208 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 116.7 ms