RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 CPA1P15085 419 aa16.94■□□□□ 0.3
SYNE2-228ENST00000639659 EPCAMP16422 314 aa16.94■□□□□ 0.3
SYNE2-228ENST00000639659 EXOSC10Q01780 885 aaKnown RBP16.94■□□□□ 0.3
SYNE2-228ENST00000639659 MTERF2Q49AM1 385 aa16.94■□□□□ 0.3
SYNE2-228ENST00000639659 TWF2Q6IBS0 349 aaKnown RBP16.94■□□□□ 0.3
SYNE2-228ENST00000639659 FLCNQ8NFG4 579 aa16.94■□□□□ 0.3
SYNE2-228ENST00000639659 DACT1Q9NYF0 836 aa16.94■□□□□ 0.3
SYNE2-228ENST00000639659 A0A0U1RQF3 1178 aa16.93■□□□□ 0.3
SYNE2-228ENST00000639659 GAS7O60861 476 aa16.93■□□□□ 0.3
SYNE2-228ENST00000639659 AKAP17AQ02040 695 aaKnown RBP16.93■□□□□ 0.3
SYNE2-228ENST00000639659 RNASELQ05823 741 aaKnown RBP16.93■□□□□ 0.3
SYNE2-228ENST00000639659 TMC5Q6UXY8 1006 aa16.93■□□□□ 0.3
SYNE2-228ENST00000639659 ASCL5Q7RTU5 278 aa16.93■□□□□ 0.3
SYNE2-228ENST00000639659 TMEM173Q86WV6 379 aaPredicted RBP16.93■□□□□ 0.3
SYNE2-228ENST00000639659 RASEFQ8IZ41 740 aa16.93■□□□□ 0.3
SYNE2-228ENST00000639659 LINC01465Q8N7H1 131 aa16.93■□□□□ 0.3
SYNE2-228ENST00000639659 CRYGNQ8WXF5 182 aa16.93■□□□□ 0.3
SYNE2-228ENST00000639659 PHKBQ93100 1093 aa16.93■□□□□ 0.3
SYNE2-228ENST00000639659 GJA10Q969M2 543 aa16.93■□□□□ 0.3
SYNE2-228ENST00000639659 SH2D3AQ9BRG2 576 aa16.93■□□□□ 0.3
SYNE2-228ENST00000639659 GCOM2Q9BZD3 368 aaPredicted RBP16.93■□□□□ 0.3
SYNE2-228ENST00000639659 PIN4Q9Y237 131 aaKnown RBP16.93■□□□□ 0.3
SYNE2-228ENST00000639659 CACNA1HO95180 2353 aa16.93■□□□□ 0.3
SYNE2-228ENST00000639659 ESYT2A0FGR8 921 aa16.92■□□□□ 0.3
SYNE2-228ENST00000639659 TMEM150BA6NC51 233 aa16.92■□□□□ 0.3
SYNE2-228ENST00000639659 EOMESO95936 686 aa16.92■□□□□ 0.3
SYNE2-228ENST00000639659 SSBP05455 408 aaKnown RBP eCLIP16.92■□□□□ 0.3
SYNE2-228ENST00000639659 GNA11P29992 359 aa16.92■□□□□ 0.3
SYNE2-228ENST00000639659 DRP2Q13474 957 aa16.92■□□□□ 0.3
SYNE2-228ENST00000639659 ATAT1Q5SQI0 421 aa16.92■□□□□ 0.3
SYNE2-228ENST00000639659 ZNF598Q86UK7 904 aaKnown RBP16.92■□□□□ 0.3
SYNE2-228ENST00000639659 CABP7Q86V35 215 aa16.92■□□□□ 0.3
SYNE2-228ENST00000639659 SKAP1Q86WV1 359 aa16.92■□□□□ 0.3
SYNE2-228ENST00000639659 CCDC136Q96JN2 1154 aa16.92■□□□□ 0.3
SYNE2-228ENST00000639659 TEKT3Q9BXF9 490 aa16.92■□□□□ 0.3
SYNE2-228ENST00000639659 ZMYND12Q9H0C1 365 aa16.92■□□□□ 0.3
SYNE2-228ENST00000639659 ZBP1Q9H171 429 aa16.92■□□□□ 0.3
SYNE2-228ENST00000639659 DZANK1Q9NVP4 752 aa16.92■□□□□ 0.3
SYNE2-228ENST00000639659 CCDC196A0A1B0GTZ2 297 aa16.91■□□□□ 0.3
SYNE2-228ENST00000639659 MSH4O15457 936 aa16.91■□□□□ 0.3
SYNE2-228ENST00000639659 LRCH2Q5VUJ6 765 aa16.91■□□□□ 0.3
SYNE2-228ENST00000639659 MCTP2Q6DN12 878 aa16.91■□□□□ 0.3
SYNE2-228ENST00000639659 ASTLQ6HA08 431 aaPredicted RBP16.91■□□□□ 0.3
SYNE2-228ENST00000639659 KIAA1841Q6NSI8 718 aa16.91■□□□□ 0.3
SYNE2-228ENST00000639659 Q6ZUG5 572 aa16.91■□□□□ 0.3
SYNE2-228ENST00000639659 FEZF2Q8TBJ5 459 aa16.91■□□□□ 0.3
SYNE2-228ENST00000639659 UNC45AQ9H3U1 944 aa16.91■□□□□ 0.3
SYNE2-228ENST00000639659 A0A087WZ62 844 aa16.9■□□□□ 0.3
SYNE2-228ENST00000639659 SFPQP23246 707 aaKnown RBP eCLIP16.9■□□□□ 0.3
SYNE2-228ENST00000639659 PHKA2P46019 1235 aa16.9■□□□□ 0.3
SYNE2-228ENST00000639659 JAK3P52333 1124 aa16.9■□□□□ 0.3
SYNE2-228ENST00000639659 KRT32Q14532 448 aa16.9■□□□□ 0.3
SYNE2-228ENST00000639659 GLB1LQ6UWU2 654 aa16.9■□□□□ 0.3
SYNE2-228ENST00000639659 MIER3Q7Z3K6 550 aa16.9■□□□□ 0.3
SYNE2-228ENST00000639659 FRMD5Q7Z6J6 570 aa16.9■□□□□ 0.3
SYNE2-228ENST00000639659 RHPN2Q8IUC4 686 aa16.9■□□□□ 0.3
SYNE2-228ENST00000639659 BICD2Q8TD16 824 aa16.9■□□□□ 0.3
SYNE2-228ENST00000639659 BCL7CQ8WUZ0 217 aaPredicted RBP16.9■□□□□ 0.3
SYNE2-228ENST00000639659 BRF1Q92994 677 aa16.9■□□□□ 0.3
SYNE2-228ENST00000639659 LENG9Q96B70 501 aa16.9■□□□□ 0.3
SYNE2-228ENST00000639659 NLRP4Q96MN2 994 aa16.9■□□□□ 0.3
SYNE2-228ENST00000639659 FDXACB1Q9BRP7 624 aaPredicted RBP16.9■□□□□ 0.3
SYNE2-228ENST00000639659 SLC26A6Q9BXS9 759 aa16.9■□□□□ 0.3
SYNE2-228ENST00000639659 VPS54Q9P1Q0 977 aa16.9■□□□□ 0.3
SYNE2-228ENST00000639659 PRR23AA6NEV1 266 aa16.89■□□□□ 0.29
SYNE2-228ENST00000639659 MEIS3P2A8K0S8 358 aa16.89■□□□□ 0.29
SYNE2-228ENST00000639659 CIITAP33076 1130 aa16.89■□□□□ 0.29
SYNE2-228ENST00000639659 NUBP1P53384 320 aa16.89■□□□□ 0.29
SYNE2-228ENST00000639659 NOMO2Q5JPE7 1267 aa16.89■□□□□ 0.29
SYNE2-228ENST00000639659 CATSPER4Q7RTX7 472 aa16.89■□□□□ 0.29
SYNE2-228ENST00000639659 ZNF710Q8N1W2 664 aa16.89■□□□□ 0.29
SYNE2-228ENST00000639659 PLCD3Q8N3E9 789 aa16.89■□□□□ 0.29
SYNE2-228ENST00000639659 CCDC148Q8NFR7 591 aa16.89■□□□□ 0.29
SYNE2-228ENST00000639659 ACSF2Q96CM8 615 aaPredicted RBP16.89■□□□□ 0.29
SYNE2-228ENST00000639659 IGSF21Q96ID5 467 aa16.89■□□□□ 0.29
SYNE2-228ENST00000639659 NRDE2Q9H7Z3 1164 aa16.89■□□□□ 0.29
SYNE2-228ENST00000639659 TBC1D13Q9NVG8 400 aa16.89■□□□□ 0.29
SYNE2-228ENST00000639659 DNAJB4Q9UDY4 337 aa16.89■□□□□ 0.29
SYNE2-228ENST00000639659 FBXL21Q9UKT6 434 aa16.89■□□□□ 0.29
SYNE2-228ENST00000639659 PRPF3O43395 683 aaKnown RBP16.88■□□□□ 0.29
SYNE2-228ENST00000639659 MYBP10242 640 aa16.88■□□□□ 0.29
SYNE2-228ENST00000639659 CTSAP10619 480 aa16.88■□□□□ 0.29
SYNE2-228ENST00000639659 SFNP31947 248 aa16.88■□□□□ 0.29
SYNE2-228ENST00000639659 SLC11A1P49279 550 aa16.88■□□□□ 0.29
SYNE2-228ENST00000639659 DNM2P50570 870 aa16.88■□□□□ 0.29
SYNE2-228ENST00000639659 RCAN1P53805 252 aa16.88■□□□□ 0.29
SYNE2-228ENST00000639659 NLRP5P59047 1200 aa16.88■□□□□ 0.29
SYNE2-228ENST00000639659 CCDC149Q6ZUS6 474 aa16.88■□□□□ 0.29
SYNE2-228ENST00000639659 DDX53Q86TM3 631 aaKnown RBP16.88■□□□□ 0.29
SYNE2-228ENST00000639659 ZDHHC14Q8IZN3 488 aa16.88■□□□□ 0.29
SYNE2-228ENST00000639659 JAKMIP1Q96N16 626 aaKnown RBP16.88■□□□□ 0.29
SYNE2-228ENST00000639659 CYP26B1Q9NR63 512 aa16.88■□□□□ 0.29
SYNE2-228ENST00000639659 FAM105AQ9NUU6 356 aa16.88■□□□□ 0.29
SYNE2-228ENST00000639659 SUCLA2Q9P2R7 463 aaPredicted RBP16.88■□□□□ 0.29
SYNE2-228ENST00000639659 DDX11L8A8MPP1 907 aa16.87■□□□□ 0.29
SYNE2-228ENST00000639659 STK25O00506 426 aa16.87■□□□□ 0.29
SYNE2-228ENST00000639659 C2CD2LO14523 706 aa16.87■□□□□ 0.29
SYNE2-228ENST00000639659 GALTP07902 379 aa16.87■□□□□ 0.29
SYNE2-228ENST00000639659 HMGB1P09429 215 aaKnown RBP16.87■□□□□ 0.29
SYNE2-228ENST00000639659 RFX1P22670 979 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms