RNA–Protein interactions for RNA: ENST00000638144.1

CLN6-225, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 576 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-225	ENST00000638144	CAPS	Q13938	189 aa		13.92	□□□□□ -0.18
CLN6-225	ENST00000638144	DSC3	Q14574	896 aa		13.92	□□□□□ -0.18
CLN6-225	ENST00000638144	PTPA	Q15257	358 aa		13.92	□□□□□ -0.18
CLN6-225	ENST00000638144	SPECC1	Q5M775	1068 aa		13.92	□□□□□ -0.18
CLN6-225	ENST00000638144	FAM102B	Q5T8I3	360 aa		13.92	□□□□□ -0.18
CLN6-225	ENST00000638144	ARL6IP4	Q66PJ3	421 aa	Known RBP	13.92	□□□□□ -0.18
CLN6-225	ENST00000638144	ZNF410	Q86VK4	478 aa		13.92	□□□□□ -0.18
CLN6-225	ENST00000638144	RNF169	Q8NCN4	708 aa		13.92	□□□□□ -0.18
CLN6-225	ENST00000638144	TCP11	Q8WWU5	503 aa		13.92	□□□□□ -0.18
CLN6-225	ENST00000638144	BSND	Q8WZ55	320 aa		13.92	□□□□□ -0.18
CLN6-225	ENST00000638144	PNMA5	Q96PV4	448 aa		13.92	□□□□□ -0.18
CLN6-225	ENST00000638144	IFT122	Q9HBG6	1241 aa		13.92	□□□□□ -0.18
CLN6-225	ENST00000638144	DBR1	Q9UK59	544 aa	Known RBP	13.92	□□□□□ -0.18
CLN6-225	ENST00000638144	PRRC2B	Q5JSZ5	2229 aa	Known RBP	13.92	□□□□□ -0.18
CLN6-225	ENST00000638144	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	13.91	□□□□□ -0.18
CLN6-225	ENST00000638144	FOSL2	P15408	326 aa		13.91	□□□□□ -0.18
CLN6-225	ENST00000638144	SFPQ	P23246	707 aa	Known RBP eCLIP	13.91	□□□□□ -0.18
CLN6-225	ENST00000638144	GRB10	Q13322	594 aa		13.91	□□□□□ -0.18
CLN6-225	ENST00000638144	ADGRE1	Q14246	886 aa		13.91	□□□□□ -0.18
CLN6-225	ENST00000638144	LONRF3	Q496Y0	759 aa		13.91	□□□□□ -0.18
CLN6-225	ENST00000638144	CATSPER4	Q7RTX7	472 aa		13.91	□□□□□ -0.18
CLN6-225	ENST00000638144	GDPD5	Q8WTR4	605 aa		13.91	□□□□□ -0.18
CLN6-225	ENST00000638144	C17orf80	Q9BSJ5	609 aa		13.91	□□□□□ -0.18
CLN6-225	ENST00000638144	RUSC1	Q9BVN2	902 aa		13.91	□□□□□ -0.18
CLN6-225	ENST00000638144	RGS18	Q9NS28	235 aa		13.91	□□□□□ -0.18
CLN6-225	ENST00000638144	LRFN2	Q9ULH4	789 aa		13.91	□□□□□ -0.18
CLN6-225	ENST00000638144	PIN4	Q9Y237	131 aa	Known RBP	13.91	□□□□□ -0.18
CLN6-225	ENST00000638144	INSL6	Q9Y581	213 aa		13.91	□□□□□ -0.18
CLN6-225	ENST00000638144	MYO7A	Q13402	2215 aa		13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	LRRIQ4	A6NIV6	560 aa		13.9	□□□□□ -0.18
CLN6-225	ENST00000638144		C9IYK1	514 aa		13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	GAS2	O43903	313 aa	Known RBP	13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	SSB	P05455	408 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	FGFR1	P11362	822 aa		13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	XRCC6	P12956	609 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	ARL2	P36404	184 aa		13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	SARS	P49591	514 aa	Known RBP	13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	RAD51AP2	Q09MP3	1159 aa		13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	USP49	Q70CQ1	688 aa		13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	CABP7	Q86V35	215 aa		13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	NPAS4	Q8IUM7	802 aa		13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	EXOC8	Q8IYI6	725 aa		13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	SP7	Q8TDD2	431 aa	Predicted RBP	13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	LRRC15	Q8TF66	581 aa		13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	CLIC6	Q96NY7	704 aa		13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	KIFC3	Q9BVG8	833 aa		13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	RC3H2	Q9HBD1	1191 aa	Known RBP	13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	TFIP11	Q9UBB9	837 aa	Known RBP	13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	HCST	Q9UBK5	93 aa		13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	DAXX	Q9UER7	740 aa	Predicted RBP	13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	FBXO2	Q9UK22	296 aa	Predicted RBP	13.9	□□□□□ -0.18
CLN6-225	ENST00000638144	ADGRA3	Q8IWK6	1321 aa		13.9	□□□□□ -0.19
CLN6-225	ENST00000638144	MYH11	P35749	1972 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	RALGAPA2	Q2PPJ7	1873 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	INO80B-WBP1	J3KQ70	363 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	CSPG5	O95196	566 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	EYA4	O95677	639 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	BMP15	O95972	392 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	F13A1	P00488	732 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	ZSCAN22	P10073	491 aa	Predicted RBP	13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	ZSCAN20	P17040	1043 aa	Predicted RBP	13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	LIG1	P18858	919 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	CYP11B2	P19099	503 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	IGFBP4	P22692	258 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	PHKA2	P46019	1235 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	DHX8	Q14562	1220 aa	Known RBP	13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	KARS	Q15046	597 aa	Known RBP	13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	ODR4	Q5SWX8	454 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	TWF2	Q6IBS0	349 aa	Known RBP	13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	CRIPAK	Q8N1N5	446 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	MICALL1	Q8N3F8	863 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	MCPH1	Q8NEM0	835 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	RASSF8	Q8NHQ8	419 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	EPSTI1	Q96J88	318 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	CDK5RAP3	Q96JB5	506 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	CHAMP1	Q96JM3	812 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	INO80B	Q9C086	356 aa	Predicted RBP	13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	CSRNP2	Q9H175	543 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	C1orf112	Q9NSG2	853 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	DNM3	Q9UQ16	869 aa		13.89	□□□□□ -0.19
CLN6-225	ENST00000638144	TBKBP1	A7MCY6	615 aa		13.88	□□□□□ -0.19
CLN6-225	ENST00000638144	B4GALT5	O43286	388 aa		13.88	□□□□□ -0.19
CLN6-225	ENST00000638144	DGKI	O75912	1065 aa		13.88	□□□□□ -0.19
CLN6-225	ENST00000638144	STAG3L1	P0CL83	205 aa		13.88	□□□□□ -0.19
CLN6-225	ENST00000638144	PLCG1	P19174	1290 aa		13.88	□□□□□ -0.19
CLN6-225	ENST00000638144	MUT	P22033	750 aa		13.88	□□□□□ -0.19
CLN6-225	ENST00000638144	PTEN	P60484	403 aa		13.88	□□□□□ -0.19
CLN6-225	ENST00000638144	CDC42EP1	Q00587	391 aa		13.88	□□□□□ -0.19
CLN6-225	ENST00000638144	CACNB1	Q02641	598 aa	Predicted RBP	13.88	□□□□□ -0.19
CLN6-225	ENST00000638144	MBTD1	Q05BQ5	628 aa		13.88	□□□□□ -0.19
CLN6-225	ENST00000638144	TFDP1	Q14186	410 aa		13.88	□□□□□ -0.19
CLN6-225	ENST00000638144	BTG3	Q14201	252 aa	Predicted RBP	13.88	□□□□□ -0.19
CLN6-225	ENST00000638144	MXD4	Q14582	209 aa	Predicted RBP	13.88	□□□□□ -0.19
CLN6-225	ENST00000638144	TMEM119	Q4V9L6	283 aa		13.88	□□□□□ -0.19
CLN6-225	ENST00000638144	SLC24A5	Q71RS6	500 aa		13.88	□□□□□ -0.19
CLN6-225	ENST00000638144	CDR2L	Q86X02	465 aa	Predicted RBP	13.88	□□□□□ -0.19
CLN6-225	ENST00000638144	ECHDC2	Q86YB7	292 aa		13.88	□□□□□ -0.19
CLN6-225	ENST00000638144	ZNF710	Q8N1W2	664 aa		13.88	□□□□□ -0.19
CLN6-225	ENST00000638144	PPM1E	Q8WY54	764 aa		13.88	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms