RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 LRRN2O75325 713 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 CD4P01730 458 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 HIST1H2AGP0C0S8 130 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-217ENST00000637988 HIST1H2ADP20671 130 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 PEX3P56589 373 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 TMEM132DQ14C87 1099 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 KRT72Q14CN4 511 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 PDIA6Q15084 440 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 TAGAPQ8N103 731 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 OR8K1Q8NGG5 319 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 HIST1H2AHQ96KK5 128 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 SLITRK1Q96PX8 696 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 HIST1H2AJQ99878 128 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 H2AFJQ9BTM1 129 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 NARFQ9UHQ1 456 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.53□□□□□ -1.36
SCN1A-217ENST00000637988 ARHGEF12Q9NZN5 1544 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 INSRP06213 1382 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 TTLL13PA6NNM8 815 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 NDUFAB1O14561 156 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 MAGEB2O15479 319 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 TXNP10599 105 aaKnown RBP6.53□□□□□ -1.36
SCN1A-217ENST00000637988 AP3M2P53677 418 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 MAP3K10Q02779 954 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 CHMP1BQ7LBR1 199 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 SENP2Q9HC62 589 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 KRCC1Q9NPI7 259 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-217ENST00000637988 CASS4Q9NQ75 786 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 NFE2L3Q9Y4A8 694 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 SAR1BQ9Y6B6 198 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 RPAP1Q9BWH6 1393 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-217ENST00000637988 POC1B-GALNT4F8VUJ3 575 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 TP53BP2Q13625 1128 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 NAALADL2Q58DX5 795 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 GNASQ5JWF2 1037 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 LMBRD2Q68DH5 695 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-217ENST00000637988 NBPF10Q6P3W6 841 aaKnown RBP6.53□□□□□ -1.36
SCN1A-217ENST00000637988 SYT10Q6XYQ8 523 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 ZNF513Q8N8E2 541 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-217ENST00000637988 TADA1Q96BN2 335 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 NGRNQ9NPE2 291 aaKnown RBP6.53□□□□□ -1.36
SCN1A-217ENST00000637988 RAD18Q9NS91 495 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 COL15A1P39059 1388 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 KDM6AO15550 1401 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-217ENST00000637988 C5orf58C9J3I9 102 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 OPHN1O60890 802 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 SASH1O94885 1247 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 GUCA1CO95843 209 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 EGFRP00533 1210 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 ITGA4P13612 1032 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 KRT20P35900 424 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 OR1G1P47890 313 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 NBPF15Q8N660 670 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 ZNF280CQ8ND82 737 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 TRIM33Q9UPN9 1127 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 IQANK1A0A1B0GTG1 560 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 ENC1O14682 589 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 TCF3P15923 654 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 PRELPP51888 382 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 COG2Q14746 738 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 SLC45A4Q5BKX6 768 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 DCP1BQ8IZD4 617 aaKnown RBP6.53□□□□□ -1.36
SCN1A-217ENST00000637988 TBCKQ8TEA7 893 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 LPAR1Q92633 364 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 SNX21Q969T3 373 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 RNF26Q9BY78 433 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-217ENST00000637988 JPH1Q9HDC5 661 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-217ENST00000637988 RRN3P2A6NIE6 340 aa6.52□□□□□ -1.36
SCN1A-217ENST00000637988 GOLGA8TH3BQL2 631 aa6.52□□□□□ -1.36
SCN1A-217ENST00000637988 HGSO14964 777 aaPredicted RBP6.52□□□□□ -1.36
SCN1A-217ENST00000637988 URODP06132 367 aa6.52□□□□□ -1.36
SCN1A-217ENST00000637988 EFNA5P52803 228 aa6.52□□□□□ -1.36
SCN1A-217ENST00000637988 BLVRAP53004 296 aa6.52□□□□□ -1.36
SCN1A-217ENST00000637988 STARD3Q14849 445 aa6.52□□□□□ -1.36
SCN1A-217ENST00000637988 ITIH5Q86UX2 942 aa6.52□□□□□ -1.36
SCN1A-217ENST00000637988 IFNLR1Q8IU57 520 aaPredicted RBP6.52□□□□□ -1.36
SCN1A-217ENST00000637988 OR9Q1Q8NGQ5 310 aa6.52□□□□□ -1.36
SCN1A-217ENST00000637988 NEK9Q8TD19 979 aa6.52□□□□□ -1.36
SCN1A-217ENST00000637988 RIN2Q8WYP3 895 aaPredicted RBP6.52□□□□□ -1.36
SCN1A-217ENST00000637988 C1QTNF7Q9BXJ2 289 aa6.52□□□□□ -1.36
SCN1A-217ENST00000637988 EML4Q9HC35 981 aaKnown RBP6.52□□□□□ -1.36
SCN1A-217ENST00000637988 XAB2Q9HCS7 855 aaKnown RBP6.52□□□□□ -1.36
SCN1A-217ENST00000637988 MRPL40Q9NQ50 206 aaKnown RBP6.52□□□□□ -1.36
SCN1A-217ENST00000637988 CDK12Q9NYV4 1490 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 BAG2O95816 211 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 IRF1P10914 325 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 IL13P35225 146 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 SKOR1P84550 965 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 NR5A1Q13285 461 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 TDRD10Q5VZ19 366 aaKnown RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 POTEDQ86YR6 584 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 ANKRD13AQ8IZ07 590 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 CLYBLQ8N0X4 340 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 CMTR1Q8N1G2 835 aaKnown RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 TAB3Q8N5C8 712 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 EMILIN2Q9BXX0 1053 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 FOXP1Q9H334 677 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 SRP68Q9UHB9 627 aaKnown RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 NCKAP1Q9Y2A7 1128 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 FLT1P17948 1338 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms