RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SORCS3Q9UPU3 1222 aa21.89■■□□□ 1.09
CLN3-262ENST00000637699 GAS7O60861 476 aa21.88■■□□□ 1.09
CLN3-262ENST00000637699 AKAP17AQ02040 695 aaKnown RBP21.88■■□□□ 1.09
CLN3-262ENST00000637699 DRP2Q13474 957 aa21.88■■□□□ 1.09
CLN3-262ENST00000637699 BMS1Q14692 1282 aaKnown RBP21.88■■□□□ 1.09
CLN3-262ENST00000637699 LONRF3Q496Y0 759 aa21.88■■□□□ 1.09
CLN3-262ENST00000637699 RARS2Q5T160 578 aaKnown RBP21.88■■□□□ 1.09
CLN3-262ENST00000637699 KANK3Q6NY19 840 aa21.88■■□□□ 1.09
CLN3-262ENST00000637699 VPS52Q8N1B4 723 aa21.88■■□□□ 1.09
CLN3-262ENST00000637699 TMEM87AQ8NBN3 555 aa21.88■■□□□ 1.09
CLN3-262ENST00000637699 BICD2Q8TD16 824 aa21.88■■□□□ 1.09
CLN3-262ENST00000637699 AUTS2Q8WXX7 1259 aa21.88■■□□□ 1.09
CLN3-262ENST00000637699 BRF1Q92994 677 aa21.88■■□□□ 1.09
CLN3-262ENST00000637699 GJA10Q969M2 543 aa21.88■■□□□ 1.09
CLN3-262ENST00000637699 TMEM169Q96HH4 297 aa21.88■■□□□ 1.09
CLN3-262ENST00000637699 MRPL9Q9BYD2 267 aaKnown RBP21.88■■□□□ 1.09
CLN3-262ENST00000637699 SMOC2Q9H3U7 446 aa21.88■■□□□ 1.09
CLN3-262ENST00000637699 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.87■■□□□ 1.09
CLN3-262ENST00000637699 EDIL3O43854 480 aa21.87■■□□□ 1.09
CLN3-262ENST00000637699 ZC3H11AO75152 810 aaKnown RBP eCLIP21.87■■□□□ 1.09
CLN3-262ENST00000637699 MTHFRP42898 656 aa21.87■■□□□ 1.09
CLN3-262ENST00000637699 UBALD2Q8IYN6 164 aa21.87■■□□□ 1.09
CLN3-262ENST00000637699 RIT2Q99578 217 aa21.87■■□□□ 1.09
CLN3-262ENST00000637699 GCOM2Q9BZD3 368 aaPredicted RBP21.87■■□□□ 1.09
CLN3-262ENST00000637699 UNC45AQ9H3U1 944 aa21.87■■□□□ 1.09
CLN3-262ENST00000637699 ASGR2P07307 311 aa21.86■■□□□ 1.09
CLN3-262ENST00000637699 SFNP31947 248 aa21.86■■□□□ 1.09
CLN3-262ENST00000637699 MTERF2Q49AM1 385 aa21.86■■□□□ 1.09
CLN3-262ENST00000637699 LRCH2Q5VUJ6 765 aa21.86■■□□□ 1.09
CLN3-262ENST00000637699 TMEM173Q86WV6 379 aaPredicted RBP21.86■■□□□ 1.09
CLN3-262ENST00000637699 SLC5A5Q92911 643 aa21.86■■□□□ 1.09
CLN3-262ENST00000637699 LPPQ93052 612 aa21.86■■□□□ 1.09
CLN3-262ENST00000637699 TEKT3Q9BXF9 490 aa21.86■■□□□ 1.09
CLN3-262ENST00000637699 SEPT9Q9UHD8 586 aaPredicted RBP21.86■■□□□ 1.09
CLN3-262ENST00000637699 TMEM150BA6NC51 233 aa21.85■■□□□ 1.09
CLN3-262ENST00000637699 GALR2O43603 387 aaPredicted RBP21.85■■□□□ 1.09
CLN3-262ENST00000637699 PHKA2P46019 1235 aa21.85■■□□□ 1.09
CLN3-262ENST00000637699 JAK3P52333 1124 aa21.85■■□□□ 1.09
CLN3-262ENST00000637699 TARBP2Q15633 366 aaKnown RBP21.85■■□□□ 1.09
CLN3-262ENST00000637699 SNX27Q96L92 541 aa21.85■■□□□ 1.09
CLN3-262ENST00000637699 JAKMIP1Q96N16 626 aaKnown RBP21.85■■□□□ 1.09
CLN3-262ENST00000637699 SH2D3AQ9BRG2 576 aa21.85■■□□□ 1.09
CLN3-262ENST00000637699 SLC26A6Q9BXS9 759 aa21.85■■□□□ 1.09
CLN3-262ENST00000637699 ZBP1Q9H171 429 aa21.85■■□□□ 1.09
CLN3-262ENST00000637699 CHST12Q9NRB3 414 aa21.85■■□□□ 1.09
CLN3-262ENST00000637699 VPS54Q9P1Q0 977 aa21.85■■□□□ 1.09
CLN3-262ENST00000637699 LIMD1Q9UGP4 676 aa21.85■■□□□ 1.09
CLN3-262ENST00000637699 A0A087WZ62 844 aa21.84■■□□□ 1.09
CLN3-262ENST00000637699 EPCAMP16422 314 aa21.84■■□□□ 1.09
CLN3-262ENST00000637699 USP11P51784 963 aa21.84■■□□□ 1.09
CLN3-262ENST00000637699 NUBP1P53384 320 aa21.84■■□□□ 1.09
CLN3-262ENST00000637699 ATAT1Q5SQI0 421 aa21.84■■□□□ 1.09
CLN3-262ENST00000637699 TWF2Q6IBS0 349 aaKnown RBP21.84■■□□□ 1.09
CLN3-262ENST00000637699 TMEM105Q8N8V8 129 aa21.84■■□□□ 1.09
CLN3-262ENST00000637699 TDRD5Q8NAT2 981 aaKnown RBP21.84■■□□□ 1.09
CLN3-262ENST00000637699 CCDC148Q8NFR7 591 aa21.84■■□□□ 1.09
CLN3-262ENST00000637699 FDXACB1Q9BRP7 624 aaPredicted RBP21.84■■□□□ 1.09
CLN3-262ENST00000637699 DBR1Q9UK59 544 aaKnown RBP21.84■■□□□ 1.09
CLN3-262ENST00000637699 INPP5FQ9Y2H2 1132 aa21.84■■□□□ 1.09
CLN3-262ENST00000637699 DNM2P50570 870 aa21.83■■□□□ 1.09
CLN3-262ENST00000637699 KIAA1841Q6NSI8 718 aa21.83■■□□□ 1.09
CLN3-262ENST00000637699 MIER3Q7Z3K6 550 aa21.83■■□□□ 1.09
CLN3-262ENST00000637699 IGSF21Q96ID5 467 aa21.83■■□□□ 1.09
CLN3-262ENST00000637699 NIFKQ9BYG3 293 aaKnown RBP21.83■■□□□ 1.09
CLN3-262ENST00000637699 NRDE2Q9H7Z3 1164 aa21.83■■□□□ 1.09
CLN3-262ENST00000637699 DZANK1Q9NVP4 752 aa21.83■■□□□ 1.09
CLN3-262ENST00000637699 PIN4Q9Y237 131 aaKnown RBP21.83■■□□□ 1.09
CLN3-262ENST00000637699 MYO15AQ9UKN7 3530 aa21.83■■□□□ 1.08
CLN3-262ENST00000637699 PTPRZ1P23471 2315 aaPredicted RBP21.82■■□□□ 1.08
CLN3-262ENST00000637699 MEIS3P2A8K0S8 358 aa21.82■■□□□ 1.08
CLN3-262ENST00000637699 CDC45O75419 566 aa21.82■■□□□ 1.08
CLN3-262ENST00000637699 PSMD10O75832 226 aa21.82■■□□□ 1.08
CLN3-262ENST00000637699 CTSAP10619 480 aa21.82■■□□□ 1.08
CLN3-262ENST00000637699 SFPQP23246 707 aaKnown RBP eCLIP21.82■■□□□ 1.08
CLN3-262ENST00000637699 POLGP54098 1239 aaPredicted RBP21.82■■□□□ 1.08
CLN3-262ENST00000637699 NLRP5P59047 1200 aa21.82■■□□□ 1.08
CLN3-262ENST00000637699 CDC42EP1Q00587 391 aa21.82■■□□□ 1.08
CLN3-262ENST00000637699 RNASELQ05823 741 aaKnown RBP21.82■■□□□ 1.08
CLN3-262ENST00000637699 NTRK3Q16288 839 aa21.82■■□□□ 1.08
CLN3-262ENST00000637699 XKR3Q5GH77 459 aa21.82■■□□□ 1.08
CLN3-262ENST00000637699 NOMO2Q5JPE7 1267 aa21.82■■□□□ 1.08
CLN3-262ENST00000637699 BLOC1S2Q6QNY1 142 aa21.82■■□□□ 1.08
CLN3-262ENST00000637699 GLB1LQ6UWU2 654 aa21.82■■□□□ 1.08
CLN3-262ENST00000637699 TMC5Q6UXY8 1006 aa21.82■■□□□ 1.08
CLN3-262ENST00000637699 DDX53Q86TM3 631 aaKnown RBP21.82■■□□□ 1.08
CLN3-262ENST00000637699 ZDHHC14Q8IZN3 488 aa21.82■■□□□ 1.08
CLN3-262ENST00000637699 FEZF2Q8TBJ5 459 aa21.82■■□□□ 1.08
CLN3-262ENST00000637699 TBCKQ8TEA7 893 aa21.82■■□□□ 1.08
CLN3-262ENST00000637699 SLC22A17Q8WUG5 538 aa21.82■■□□□ 1.08
CLN3-262ENST00000637699 BCL7CQ8WUZ0 217 aaPredicted RBP21.82■■□□□ 1.08
CLN3-262ENST00000637699 RNF26Q9BY78 433 aaPredicted RBP21.82■■□□□ 1.08
CLN3-262ENST00000637699 GBP3Q9H0R5 595 aa21.82■■□□□ 1.08
CLN3-262ENST00000637699 TBC1D13Q9NVG8 400 aa21.82■■□□□ 1.08
CLN3-262ENST00000637699 SUCLA2Q9P2R7 463 aaPredicted RBP21.82■■□□□ 1.08
CLN3-262ENST00000637699 DDX11L8A8MPP1 907 aa21.81■■□□□ 1.08
CLN3-262ENST00000637699 STBD1O95210 358 aa21.81■■□□□ 1.08
CLN3-262ENST00000637699 GALTP07902 379 aa21.81■■□□□ 1.08
CLN3-262ENST00000637699 SKIP12755 728 aa21.81■■□□□ 1.08
CLN3-262ENST00000637699 CCT2P78371 535 aaKnown RBP21.81■■□□□ 1.08
CLN3-262ENST00000637699 CABP7Q86V35 215 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms