RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 PSPC1Q8WXF1 523 aaKnown RBP21.47■■□□□ 1.03
CLN3-260ENST00000637578 SYMPKQ92797 1274 aaKnown RBP21.47■■□□□ 1.03
CLN3-260ENST00000637578 TMEM143Q96AN5 459 aa21.47■■□□□ 1.03
CLN3-260ENST00000637578 INTS4Q96HW7 963 aaKnown RBP21.47■■□□□ 1.03
CLN3-260ENST00000637578 LMAN2LQ9H0V9 348 aa21.47■■□□□ 1.03
CLN3-260ENST00000637578 ATP6V0A4Q9HBG4 840 aa21.47■■□□□ 1.03
CLN3-260ENST00000637578 XPNPEP1Q9NQW7 623 aa21.47■■□□□ 1.03
CLN3-260ENST00000637578 FOXD4L1Q9NU39 408 aa21.47■■□□□ 1.03
CLN3-260ENST00000637578 RNF19AQ9NV58 838 aa21.47■■□□□ 1.03
CLN3-260ENST00000637578 ASAP2O43150 1006 aa21.46■■□□□ 1.03
CLN3-260ENST00000637578 SFPQP23246 707 aaKnown RBP eCLIP21.46■■□□□ 1.03
CLN3-260ENST00000637578 TECP42680 631 aa21.46■■□□□ 1.03
CLN3-260ENST00000637578 PAN2Q504Q3 1202 aaKnown RBP21.46■■□□□ 1.03
CLN3-260ENST00000637578 ZNF598Q86UK7 904 aaKnown RBP21.46■■□□□ 1.03
CLN3-260ENST00000637578 CATSPER3Q86XQ3 398 aa21.46■■□□□ 1.03
CLN3-260ENST00000637578 TCP11Q8WWU5 503 aa21.46■■□□□ 1.03
CLN3-260ENST00000637578 NLRP4Q96MN2 994 aa21.46■■□□□ 1.03
CLN3-260ENST00000637578 POLR3CQ9BUI4 534 aaPredicted RBP21.46■■□□□ 1.03
CLN3-260ENST00000637578 TUFT1Q9NNX1 390 aa21.46■■□□□ 1.03
CLN3-260ENST00000637578 DACT1Q9NYF0 836 aa21.46■■□□□ 1.03
CLN3-260ENST00000637578 NOL7Q9UMY1 257 aaKnown RBP21.46■■□□□ 1.03
CLN3-260ENST00000637578 PLAGL2Q9UPG8 496 aa21.46■■□□□ 1.03
CLN3-260ENST00000637578 CUL9Q8IWT3 2517 aa21.46■■□□□ 1.03
CLN3-260ENST00000637578 GRM6O15303 877 aa21.45■■□□□ 1.02
CLN3-260ENST00000637578 FGFR1P11362 822 aa21.45■■□□□ 1.02
CLN3-260ENST00000637578 RARRES1P49788 294 aa21.45■■□□□ 1.02
CLN3-260ENST00000637578 TFF2Q03403 129 aa21.45■■□□□ 1.02
CLN3-260ENST00000637578 LAMTOR4Q0VGL1 99 aa21.45■■□□□ 1.02
CLN3-260ENST00000637578 FERMT3Q86UX7 667 aa21.45■■□□□ 1.02
CLN3-260ENST00000637578 HLA-CQ95604 372 aa21.45■■□□□ 1.02
CLN3-260ENST00000637578 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.44■■□□□ 1.02
CLN3-260ENST00000637578 TBKBP1A7MCY6 615 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 DGAT1O75907 488 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 EOMESO95936 686 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 CAMK1Q14012 370 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 AAK1Q2M2I8 961 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 TIGD5Q53EQ6 642 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 SRGAP1Q7Z6B7 1085 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 CASD1Q96PB1 797 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 MTRQ99707 1265 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 TMEM117Q9H0C3 514 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 HOXA2O43364 376 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 MED24O75448 989 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 ITGB1P05556 798 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 ATF7P17544 494 aaPredicted RBP21.44■■□□□ 1.02
CLN3-260ENST00000637578 RPA1P27694 616 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 FXR2P51116 673 aaKnown RBP eCLIP21.44■■□□□ 1.02
CLN3-260ENST00000637578 POU5F1BQ06416 359 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 NBR1Q14596 966 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 COL19A1Q14993 1142 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 PIGOQ8TEQ8 1089 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 MINDY3Q9H8M7 445 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 PCDHB6Q9Y5E3 794 aa21.44■■□□□ 1.02
CLN3-260ENST00000637578 FNDC1Q4ZHG4 1894 aaPredicted RBP21.44■■□□□ 1.02
CLN3-260ENST00000637578 SRGAP2CP0DJJ0 459 aa21.43■■□□□ 1.02
CLN3-260ENST00000637578 BMP1P13497 986 aa21.43■■□□□ 1.02
CLN3-260ENST00000637578 IBSPP21815 317 aaPredicted RBP21.43■■□□□ 1.02
CLN3-260ENST00000637578 MXD4Q14582 209 aaPredicted RBP21.43■■□□□ 1.02
CLN3-260ENST00000637578 KLHL23Q8NBE8 558 aa21.43■■□□□ 1.02
CLN3-260ENST00000637578 SPPL3Q8TCT6 385 aa21.43■■□□□ 1.02
CLN3-260ENST00000637578 NSUN3Q9H649 340 aaKnown RBP21.43■■□□□ 1.02
CLN3-260ENST00000637578 CWH43Q9H720 699 aa21.43■■□□□ 1.02
CLN3-260ENST00000637578 BMP2KQ9NSY1 1161 aaPredicted RBP21.43■■□□□ 1.02
CLN3-260ENST00000637578 TYW1Q9NV66 732 aaKnown RBP21.43■■□□□ 1.02
CLN3-260ENST00000637578 DBR1Q9UK59 544 aaKnown RBP21.43■■□□□ 1.02
CLN3-260ENST00000637578 A0A087WWV3 80 aa21.42■■□□□ 1.02
CLN3-260ENST00000637578 MUTP22033 750 aa21.42■■□□□ 1.02
CLN3-260ENST00000637578 ARL2P36404 184 aa21.42■■□□□ 1.02
CLN3-260ENST00000637578 PHKA2P46019 1235 aa21.42■■□□□ 1.02
CLN3-260ENST00000637578 PDIA5Q14554 519 aa21.42■■□□□ 1.02
CLN3-260ENST00000637578 LRRC55Q6ZSA7 311 aa21.42■■□□□ 1.02
CLN3-260ENST00000637578 CATSPER4Q7RTX7 472 aa21.42■■□□□ 1.02
CLN3-260ENST00000637578 IFNLR1Q8IU57 520 aaPredicted RBP21.42■■□□□ 1.02
CLN3-260ENST00000637578 ERMNQ8TAM6 284 aa21.42■■□□□ 1.02
CLN3-260ENST00000637578 ALG13Q9NP73 1137 aaKnown RBP21.42■■□□□ 1.02
CLN3-260ENST00000637578 AGPAT5Q9NUQ2 364 aa21.42■■□□□ 1.02
CLN3-260ENST00000637578 ARID2Q68CP9 1835 aa21.42■■□□□ 1.02
CLN3-260ENST00000637578 ZNF623O75123 536 aa21.41■■□□□ 1.02
CLN3-260ENST00000637578 HSP90AA1P07900 732 aaKnown RBP21.41■■□□□ 1.02
CLN3-260ENST00000637578 HOXA11P31270 313 aaPredicted RBP21.41■■□□□ 1.02
CLN3-260ENST00000637578 PTENP60484 403 aa21.41■■□□□ 1.02
CLN3-260ENST00000637578 PTGDRQ13258 359 aa21.41■■□□□ 1.02
CLN3-260ENST00000637578 TCEAL5Q5H9L2 206 aa21.41■■□□□ 1.02
CLN3-260ENST00000637578 CLLU1OSQ5K130 101 aa21.41■■□□□ 1.02
CLN3-260ENST00000637578 IGSF22Q8N9C0 903 aa21.41■■□□□ 1.02
CLN3-260ENST00000637578 RNF149Q8NC42 400 aa21.41■■□□□ 1.02
CLN3-260ENST00000637578 NACC1Q96RE7 527 aa21.41■■□□□ 1.02
CLN3-260ENST00000637578 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.41■■□□□ 1.02
CLN3-260ENST00000637578 TTC28Q96AY4 2481 aa21.41■■□□□ 1.02
CLN3-260ENST00000637578 LAD1O00515 517 aa21.4■■□□□ 1.02
CLN3-260ENST00000637578 DNAJB1P25685 340 aa21.4■■□□□ 1.02
CLN3-260ENST00000637578 BECN1Q14457 450 aa21.4■■□□□ 1.02
CLN3-260ENST00000637578 PCBP1Q15365 356 aaKnown RBP eCLIP21.4■■□□□ 1.02
CLN3-260ENST00000637578 AAASQ9NRG9 546 aa21.4■■□□□ 1.02
CLN3-260ENST00000637578 HCSTQ9UBK5 93 aa21.4■■□□□ 1.02
CLN3-260ENST00000637578 PIN4Q9Y237 131 aaKnown RBP21.4■■□□□ 1.02
CLN3-260ENST00000637578 PCDHB12Q9Y5F1 795 aa21.4■■□□□ 1.02
CLN3-260ENST00000637578 KIAA1671Q9BY89 1806 aa21.4■■□□□ 1.02
CLN3-260ENST00000637578 BRWD1Q9NSI6 2320 aa21.4■■□□□ 1.02
CLN3-260ENST00000637578 SKIP12755 728 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms