RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 USP28Q96RU2 1077 aa20.3■□□□□ 0.84
CLN3-259ENST00000637551 IFT122Q9HBG6 1241 aa20.3■□□□□ 0.84
CLN3-259ENST00000637551 RGS18Q9NS28 235 aa20.3■□□□□ 0.84
CLN3-259ENST00000637551 CFAP45Q9UL16 551 aa20.3■□□□□ 0.84
CLN3-259ENST00000637551 GINS2Q9Y248 185 aa20.3■□□□□ 0.84
CLN3-259ENST00000637551 ENPP3O14638 875 aa20.29■□□□□ 0.84
CLN3-259ENST00000637551 BRD1O95696 1058 aa20.29■□□□□ 0.84
CLN3-259ENST00000637551 STAG3L1P0CL83 205 aa20.29■□□□□ 0.84
CLN3-259ENST00000637551 TXLNAP40222 546 aa20.29■□□□□ 0.84
CLN3-259ENST00000637551 DEFB103AP81534 67 aa20.29■□□□□ 0.84
CLN3-259ENST00000637551 DSC3Q14574 896 aa20.29■□□□□ 0.84
CLN3-259ENST00000637551 SLC24A5Q71RS6 500 aa20.29■□□□□ 0.84
CLN3-259ENST00000637551 NPAS4Q8IUM7 802 aa20.29■□□□□ 0.84
CLN3-259ENST00000637551 KRI1Q8N9T8 703 aaKnown RBP20.29■□□□□ 0.84
CLN3-259ENST00000637551 LINC00301Q8NCQ3 95 aa20.29■□□□□ 0.84
CLN3-259ENST00000637551 KCNG4Q8TDN1 519 aa20.29■□□□□ 0.84
CLN3-259ENST00000637551 SH2D3AQ9BRG2 576 aa20.29■□□□□ 0.84
CLN3-259ENST00000637551 OSBPL7Q9BZF2 842 aa20.29■□□□□ 0.84
CLN3-259ENST00000637551 BHMT2Q9H2M3 363 aa20.29■□□□□ 0.84
CLN3-259ENST00000637551 CDHR5Q9HBB8 845 aa20.29■□□□□ 0.84
CLN3-259ENST00000637551 FBXO2Q9UK22 296 aaPredicted RBP20.29■□□□□ 0.84
CLN3-259ENST00000637551 CLIC4Q9Y696 253 aa20.29■□□□□ 0.84
CLN3-259ENST00000637551 CHD9Q3L8U1 2897 aa20.28■□□□□ 0.84
CLN3-259ENST00000637551 RALGAPA2Q2PPJ7 1873 aa20.28■□□□□ 0.84
CLN3-259ENST00000637551 MYO9BQ13459 2157 aa20.28■□□□□ 0.84
CLN3-259ENST00000637551 TLL1O43897 1013 aa20.28■□□□□ 0.84
CLN3-259ENST00000637551 SKIP12755 728 aa20.28■□□□□ 0.84
CLN3-259ENST00000637551 AXLP30530 894 aa20.28■□□□□ 0.84
CLN3-259ENST00000637551 SARSP49591 514 aaKnown RBP20.28■□□□□ 0.84
CLN3-259ENST00000637551 PTENP60484 403 aa20.28■□□□□ 0.84
CLN3-259ENST00000637551 ECM1Q16610 540 aa20.28■□□□□ 0.84
CLN3-259ENST00000637551 CABP7Q86V35 215 aa20.28■□□□□ 0.84
CLN3-259ENST00000637551 MYOCDQ8IZQ8 938 aa20.28■□□□□ 0.84
CLN3-259ENST00000637551 CCDC51Q96ER9 411 aa20.28■□□□□ 0.84
CLN3-259ENST00000637551 SAMD11Q96NU1 681 aa20.28■□□□□ 0.84
CLN3-259ENST00000637551 TMX1Q9H3N1 280 aa20.28■□□□□ 0.84
CLN3-259ENST00000637551 SLC28A3Q9HAS3 691 aa20.28■□□□□ 0.84
CLN3-259ENST00000637551 A0A087WZ62 844 aa20.27■□□□□ 0.84
CLN3-259ENST00000637551 DENND3A2RUS2 1198 aa20.27■□□□□ 0.84
CLN3-259ENST00000637551 HOXA2O43364 376 aa20.27■□□□□ 0.84
CLN3-259ENST00000637551 USO1O60763 962 aaKnown RBP20.27■□□□□ 0.84
CLN3-259ENST00000637551 ZSCAN20P17040 1043 aaPredicted RBP20.27■□□□□ 0.84
CLN3-259ENST00000637551 GUCY2CP25092 1073 aa20.27■□□□□ 0.84
CLN3-259ENST00000637551 RAB27AP51159 221 aa20.27■□□□□ 0.84
CLN3-259ENST00000637551 FAM189BP81408 668 aa20.27■□□□□ 0.84
CLN3-259ENST00000637551 NFX1Q12986 1120 aaKnown RBP20.27■□□□□ 0.84
CLN3-259ENST00000637551 CDCA2Q69YH5 1023 aaPredicted RBP20.27■□□□□ 0.84
CLN3-259ENST00000637551 SYT2Q8N9I0 419 aaPredicted RBP20.27■□□□□ 0.84
CLN3-259ENST00000637551 RNF149Q8NC42 400 aa20.27■□□□□ 0.84
CLN3-259ENST00000637551 LINC01599Q8WXQ3 324 aa20.27■□□□□ 0.84
CLN3-259ENST00000637551 KCNN1Q92952 543 aa20.27■□□□□ 0.84
CLN3-259ENST00000637551 TMEM143Q96AN5 459 aa20.27■□□□□ 0.84
CLN3-259ENST00000637551 PRIMPOLQ96LW4 560 aa20.27■□□□□ 0.84
CLN3-259ENST00000637551 DRC1Q96MC2 740 aa20.27■□□□□ 0.84
CLN3-259ENST00000637551 FDXACB1Q9BRP7 624 aaPredicted RBP20.27■□□□□ 0.84
CLN3-259ENST00000637551 ZBED2Q9BTP6 218 aa20.27■□□□□ 0.84
CLN3-259ENST00000637551 C2orf40Q9H1Z8 148 aa20.27■□□□□ 0.84
CLN3-259ENST00000637551 RC3H2Q9HBD1 1191 aaKnown RBP20.27■□□□□ 0.84
CLN3-259ENST00000637551 STK17AQ9UEE5 414 aa20.27■□□□□ 0.84
CLN3-259ENST00000637551 NCOR1O75376 2440 aa20.26■□□□□ 0.83
CLN3-259ENST00000637551 PP2D1A8MPX8 630 aa20.26■□□□□ 0.83
CLN3-259ENST00000637551 C9IYK1 514 aa20.26■□□□□ 0.83
CLN3-259ENST00000637551 NAMPTP43490 491 aa20.26■□□□□ 0.83
CLN3-259ENST00000637551 GRB10Q13322 594 aa20.26■□□□□ 0.83
CLN3-259ENST00000637551 STK38Q15208 465 aa20.26■□□□□ 0.83
CLN3-259ENST00000637551 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.26■□□□□ 0.83
CLN3-259ENST00000637551 NLRP4Q96MN2 994 aa20.26■□□□□ 0.83
CLN3-259ENST00000637551 POLR3FQ9H1D9 316 aaPredicted RBP20.26■□□□□ 0.83
CLN3-259ENST00000637551 ZNF576Q9H609 170 aa20.26■□□□□ 0.83
CLN3-259ENST00000637551 AGPAT5Q9NUQ2 364 aa20.26■□□□□ 0.83
CLN3-259ENST00000637551 TMEM161AQ9NX61 479 aa20.26■□□□□ 0.83
CLN3-259ENST00000637551 CCDC39Q9UFE4 941 aa20.26■□□□□ 0.83
CLN3-259ENST00000637551 RWDD3Q9Y3V2 267 aa20.26■□□□□ 0.83
CLN3-259ENST00000637551 MYH11P35749 1972 aa20.26■□□□□ 0.83
CLN3-259ENST00000637551 ZMYM2Q9UBW7 1377 aa20.25■□□□□ 0.83
CLN3-259ENST00000637551 CARNS1A5YM72 827 aa20.25■□□□□ 0.83
CLN3-259ENST00000637551 SPTLC2O15270 562 aa20.25■□□□□ 0.83
CLN3-259ENST00000637551 EOMESO95936 686 aa20.25■□□□□ 0.83
CLN3-259ENST00000637551 GLRA2P23416 452 aa20.25■□□□□ 0.83
CLN3-259ENST00000637551 EFNA5P52803 228 aa20.25■□□□□ 0.83
CLN3-259ENST00000637551 NCBP1Q09161 790 aaKnown RBP20.25■□□□□ 0.83
CLN3-259ENST00000637551 FAM187BQ17R55 369 aa20.25■□□□□ 0.83
CLN3-259ENST00000637551 PPP4R3CPQ6ZMV5 832 aa20.25■□□□□ 0.83
CLN3-259ENST00000637551 FAM122AQ96E09 287 aa20.25■□□□□ 0.83
CLN3-259ENST00000637551 PNMA5Q96PV4 448 aa20.25■□□□□ 0.83
CLN3-259ENST00000637551 ADAM2Q99965 735 aa20.25■□□□□ 0.83
CLN3-259ENST00000637551 YBX2Q9Y2T7 364 aaKnown RBP20.25■□□□□ 0.83
CLN3-259ENST00000637551 A0A0U1RQF3 1178 aa20.24■□□□□ 0.83
CLN3-259ENST00000637551 GRXCR1A8MXD5 290 aa20.24■□□□□ 0.83
CLN3-259ENST00000637551 ZNF623O75123 536 aa20.24■□□□□ 0.83
CLN3-259ENST00000637551 CDC25AP30304 524 aa20.24■□□□□ 0.83
CLN3-259ENST00000637551 ABCD1P33897 745 aa20.24■□□□□ 0.83
CLN3-259ENST00000637551 NUCB2P80303 420 aa20.24■□□□□ 0.83
CLN3-259ENST00000637551 CAPSQ13938 189 aa20.24■□□□□ 0.83
CLN3-259ENST00000637551 GRIN2CQ14957 1233 aa20.24■□□□□ 0.83
CLN3-259ENST00000637551 PPP2R2DQ66LE6 453 aa20.24■□□□□ 0.83
CLN3-259ENST00000637551 FAM173BQ6P4H8 233 aa20.24■□□□□ 0.83
CLN3-259ENST00000637551 C1orf186Q6ZWK4 172 aa20.24■□□□□ 0.83
CLN3-259ENST00000637551 RTN4RL1Q86UN2 441 aaPredicted RBP20.24■□□□□ 0.83
CLN3-259ENST00000637551 CMTR2Q8IYT2 770 aaKnown RBP20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms