RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 RNF149Q8NC42 400 aa22.52■■□□□ 1.2
PTCD3-220ENST00000627371 RAD54LQ92698 747 aa22.52■■□□□ 1.2
PTCD3-220ENST00000627371 RUSC1Q9BVN2 902 aa22.52■■□□□ 1.2
PTCD3-220ENST00000627371 FTHL17Q9BXU8 183 aa22.52■■□□□ 1.2
PTCD3-220ENST00000627371 KCND2Q9NZV8 630 aa22.52■■□□□ 1.2
PTCD3-220ENST00000627371 STK17AQ9UEE5 414 aa22.52■■□□□ 1.2
PTCD3-220ENST00000627371 ST3GAL5Q9UNP4 418 aa22.52■■□□□ 1.2
PTCD3-220ENST00000627371 SLC4A7Q9Y6M7 1214 aa22.52■■□□□ 1.2
PTCD3-220ENST00000627371 SSBP05455 408 aaKnown RBP eCLIP22.51■■□□□ 1.19
PTCD3-220ENST00000627371 SRGAP2CP0DJJ0 459 aa22.51■■□□□ 1.19
PTCD3-220ENST00000627371 POU5F1BQ06416 359 aa22.51■■□□□ 1.19
PTCD3-220ENST00000627371 NFX1Q12986 1120 aaKnown RBP22.51■■□□□ 1.19
PTCD3-220ENST00000627371 CAPSQ13938 189 aa22.51■■□□□ 1.19
PTCD3-220ENST00000627371 TFDP1Q14186 410 aa22.51■■□□□ 1.19
PTCD3-220ENST00000627371 RRAGBQ5VZM2 374 aa22.51■■□□□ 1.19
PTCD3-220ENST00000627371 CCDC73Q6ZRK6 1079 aa22.51■■□□□ 1.19
PTCD3-220ENST00000627371 LARP4BQ92615 738 aaKnown RBP22.51■■□□□ 1.19
PTCD3-220ENST00000627371 KIFAP3Q92845 792 aa22.51■■□□□ 1.19
PTCD3-220ENST00000627371 SLC9A7Q96T83 725 aa22.51■■□□□ 1.19
PTCD3-220ENST00000627371 TIPINQ9BVW5 301 aa22.51■■□□□ 1.19
PTCD3-220ENST00000627371 INO80BQ9C086 356 aaPredicted RBP22.51■■□□□ 1.19
PTCD3-220ENST00000627371 GUCY2CP25092 1073 aa22.5■■□□□ 1.19
PTCD3-220ENST00000627371 SRGAP1Q7Z6B7 1085 aa22.5■■□□□ 1.19
PTCD3-220ENST00000627371 TMX1Q9H3N1 280 aa22.5■■□□□ 1.19
PTCD3-220ENST00000627371 A0A087X0B3 334 aa22.49■■□□□ 1.19
PTCD3-220ENST00000627371 LOC101059915A0A1B0GWI6 518 aaPredicted RBP22.49■■□□□ 1.19
PTCD3-220ENST00000627371 ATP2A2P16615 1042 aaKnown RBP22.49■■□□□ 1.19
PTCD3-220ENST00000627371 SFPQP23246 707 aaKnown RBP eCLIP22.49■■□□□ 1.19
PTCD3-220ENST00000627371 PHKA2P46019 1235 aa22.49■■□□□ 1.19
PTCD3-220ENST00000627371 PTENP60484 403 aa22.49■■□□□ 1.19
PTCD3-220ENST00000627371 DEFB103AP81534 67 aa22.49■■□□□ 1.19
PTCD3-220ENST00000627371 MCM6Q14566 821 aa22.49■■□□□ 1.19
PTCD3-220ENST00000627371 NAALADL2Q58DX5 795 aa22.49■■□□□ 1.19
PTCD3-220ENST00000627371 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.49■■□□□ 1.19
PTCD3-220ENST00000627371 IFNLR1Q8IU57 520 aaPredicted RBP22.49■■□□□ 1.19
PTCD3-220ENST00000627371 PHOSPHO2Q8TCD6 241 aa22.49■■□□□ 1.19
PTCD3-220ENST00000627371 NFKBIZQ9BYH8 718 aa22.49■■□□□ 1.19
PTCD3-220ENST00000627371 CHMP5Q9NZZ3 219 aa22.49■■□□□ 1.19
PTCD3-220ENST00000627371 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.48■■□□□ 1.19
PTCD3-220ENST00000627371 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.48■■□□□ 1.19
PTCD3-220ENST00000627371 HIP1RO75146 1068 aa22.48■■□□□ 1.19
PTCD3-220ENST00000627371 CSDE1O75534 798 aaKnown RBP22.48■■□□□ 1.19
PTCD3-220ENST00000627371 AMHP03971 560 aa22.48■■□□□ 1.19
PTCD3-220ENST00000627371 STAT6P42226 847 aa22.48■■□□□ 1.19
PTCD3-220ENST00000627371 MAPK7Q13164 816 aa22.48■■□□□ 1.19
PTCD3-220ENST00000627371 RESP18Q5W5W9 173 aa22.48■■□□□ 1.19
PTCD3-220ENST00000627371 ADALQ6DHV7 355 aa22.48■■□□□ 1.19
PTCD3-220ENST00000627371 FAM109BQ6ICB4 259 aaPredicted RBP22.48■■□□□ 1.19
PTCD3-220ENST00000627371 GPBP1Q86WP2 473 aa22.48■■□□□ 1.19
PTCD3-220ENST00000627371 DAW1Q8N136 415 aa22.48■■□□□ 1.19
PTCD3-220ENST00000627371 LINC01599Q8WXQ3 324 aa22.48■■□□□ 1.19
PTCD3-220ENST00000627371 BSNDQ8WZ55 320 aa22.48■■□□□ 1.19
PTCD3-220ENST00000627371 DRC1Q96MC2 740 aa22.48■■□□□ 1.19
PTCD3-220ENST00000627371 FGFR4P22455 802 aa22.47■■□□□ 1.19
PTCD3-220ENST00000627371 NAMPTP43490 491 aa22.47■■□□□ 1.19
PTCD3-220ENST00000627371 SMAD3P84022 425 aaKnown RBP22.47■■□□□ 1.19
PTCD3-220ENST00000627371 DHX8Q14562 1220 aaKnown RBP22.47■■□□□ 1.19
PTCD3-220ENST00000627371 PPP2R5AQ15172 486 aa22.47■■□□□ 1.19
PTCD3-220ENST00000627371 ARSHQ5FYA8 562 aa22.47■■□□□ 1.19
PTCD3-220ENST00000627371 PDILTQ8N807 584 aa22.47■■□□□ 1.19
PTCD3-220ENST00000627371 IFT74Q96LB3 600 aa22.47■■□□□ 1.19
PTCD3-220ENST00000627371 PANK2Q9BZ23 570 aa22.47■■□□□ 1.19
PTCD3-220ENST00000627371 TSPYL2Q9H2G4 693 aaPredicted RBP22.47■■□□□ 1.19
PTCD3-220ENST00000627371 MINDY3Q9H8M7 445 aa22.47■■□□□ 1.19
PTCD3-220ENST00000627371 POLD4Q9HCU8 107 aa22.47■■□□□ 1.19
PTCD3-220ENST00000627371 FAM13BQ9NYF5 915 aa22.47■■□□□ 1.19
PTCD3-220ENST00000627371 LRRIQ4A6NIV6 560 aa22.46■■□□□ 1.19
PTCD3-220ENST00000627371 ENPP3O14638 875 aa22.46■■□□□ 1.19
PTCD3-220ENST00000627371 MGEA5O60502 916 aa22.46■■□□□ 1.19
PTCD3-220ENST00000627371 DSC3Q14574 896 aa22.46■■□□□ 1.19
PTCD3-220ENST00000627371 PCBP1Q15365 356 aaKnown RBP eCLIP22.46■■□□□ 1.19
PTCD3-220ENST00000627371 CDCA2Q69YH5 1023 aaPredicted RBP22.46■■□□□ 1.19
PTCD3-220ENST00000627371 CATSPER4Q7RTX7 472 aa22.46■■□□□ 1.19
PTCD3-220ENST00000627371 RTN4RL1Q86UN2 441 aaPredicted RBP22.46■■□□□ 1.19
PTCD3-220ENST00000627371 MYOCDQ8IZQ8 938 aa22.46■■□□□ 1.19
PTCD3-220ENST00000627371 IPO9Q96P70 1041 aaKnown RBP22.46■■□□□ 1.19
PTCD3-220ENST00000627371 C17orf75Q9HAS0 396 aa22.46■■□□□ 1.19
PTCD3-220ENST00000627371 GDPD2Q9HCC8 539 aa22.46■■□□□ 1.19
PTCD3-220ENST00000627371 GRXCR1A8MXD5 290 aa22.45■■□□□ 1.18
PTCD3-220ENST00000627371 MBTD1Q05BQ5 628 aa22.45■■□□□ 1.18
PTCD3-220ENST00000627371 RAD51AP2Q09MP3 1159 aa22.45■■□□□ 1.18
PTCD3-220ENST00000627371 E2F4Q16254 413 aa22.45■■□□□ 1.18
PTCD3-220ENST00000627371 HERC6Q8IVU3 1022 aa22.45■■□□□ 1.18
PTCD3-220ENST00000627371 ADAM2Q99965 735 aa22.45■■□□□ 1.18
PTCD3-220ENST00000627371 C2orf40Q9H1Z8 148 aa22.45■■□□□ 1.18
PTCD3-220ENST00000627371 RGS18Q9NS28 235 aa22.45■■□□□ 1.18
PTCD3-220ENST00000627371 ODF2LQ9ULJ1 636 aa22.45■■□□□ 1.18
PTCD3-220ENST00000627371 NPHP3-ACAD11A0A0J9YXS1 232 aa22.44■■□□□ 1.18
PTCD3-220ENST00000627371 DENND3A2RUS2 1198 aa22.44■■□□□ 1.18
PTCD3-220ENST00000627371 INO80B-WBP1J3KQ70 363 aa22.44■■□□□ 1.18
PTCD3-220ENST00000627371 SOX1O00570 391 aaPredicted RBP22.44■■□□□ 1.18
PTCD3-220ENST00000627371 ZSCAN20P17040 1043 aaPredicted RBP22.44■■□□□ 1.18
PTCD3-220ENST00000627371 CMA1P23946 247 aa22.44■■□□□ 1.18
PTCD3-220ENST00000627371 DMP1Q13316 513 aaPredicted RBP22.44■■□□□ 1.18
PTCD3-220ENST00000627371 SV2BQ7L1I2 683 aa22.44■■□□□ 1.18
PTCD3-220ENST00000627371 ZBTB8OSQ8IWT0 167 aa22.44■■□□□ 1.18
PTCD3-220ENST00000627371 IQUBQ8NA54 791 aa22.44■■□□□ 1.18
PTCD3-220ENST00000627371 DEPTORQ8TB45 409 aa22.44■■□□□ 1.18
PTCD3-220ENST00000627371 TOP1MTQ969P6 601 aa22.44■■□□□ 1.18
PTCD3-220ENST00000627371 REEP2Q9BRK0 252 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms