RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 CASP8Q14790 479 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 PHLDB3Q6NSJ2 640 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 SWSAP1Q6NVH7 229 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 ARHGAP27Q6ZUM4 889 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 STXBP4Q6ZWJ1 553 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 CCDC127Q96BQ5 260 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 POP1Q99575 1024 aaKnown RBP11.58□□□□□ -0.56
CUX1-221ENST00000622516 ACP6Q9NPH0 428 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 RBM12Q9NTZ6 932 aaKnown RBP11.58□□□□□ -0.56
CUX1-221ENST00000622516 DMAC2Q9NW81 257 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 HYOU1Q9Y4L1 999 aa11.58□□□□□ -0.56
CUX1-221ENST00000622516 DOCK5Q9H7D0 1870 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 EMSYQ7Z589 1322 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 GRID2IPA4D2P6 1211 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 DDX3XO00571 662 aaKnown RBP eCLIP11.57□□□□□ -0.561e-8■■□□□ 13.3
CUX1-221ENST00000622516 PLS3P13797 630 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 JAM2P57087 298 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 PPP3CAQ08209 521 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 NLRX1Q86UT6 975 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 VSIG10LQ86VR7 867 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 PALB2Q86YC2 1186 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 PLEKHO2Q8TD55 490 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 STRA6Q9BX79 667 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 KCND2Q9NZV8 630 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 MAP2K7O14733 419 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 ZNF862O60290 1169 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 USP8P40818 1118 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 MYL7Q01449 175 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 HDXQ7Z353 690 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 KCTD17Q8N5Z5 321 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 HNRNPLLQ8WVV9 542 aaKnown RBP11.57□□□□□ -0.56
CUX1-221ENST00000622516 KAT5Q92993 513 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 KLRG1Q96E93 195 aa11.57□□□□□ -0.56
CUX1-221ENST00000622516 INTS2Q9H0H0 1204 aaKnown RBP11.57□□□□□ -0.56
CUX1-221ENST00000622516 CHORDC1Q9UHD1 332 aaPredicted RBP11.57□□□□□ -0.56
CUX1-221ENST00000622516 ERICH4A6NGS2 130 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 WDR64B1ANS9 1081 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 ANKRD63C9JTQ0 380 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 F8VZ95 297 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 FOXN3O00409 490 aaPredicted RBP11.56□□□□□ -0.56
CUX1-221ENST00000622516 DSG3P32926 999 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 PSMC5P62195 406 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 RNF10Q8N5U6 811 aaKnown RBP11.56□□□□□ -0.56
CUX1-221ENST00000622516 LNX1Q8TBB1 728 aaPredicted RBP11.56□□□□□ -0.56
CUX1-221ENST00000622516 BSNDQ8WZ55 320 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 CEP170P1Q96L14 293 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 A1CFQ9NQ94 594 aaKnown RBP11.56□□□□□ -0.56
CUX1-221ENST00000622516 HSPBP1Q9NZL4 362 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 COL11A1P12107 1806 aaPredicted RBP11.56□□□□□ -0.56
CUX1-221ENST00000622516 ZSCAN5CA6NGD5 496 aaPredicted RBP11.56□□□□□ -0.56
CUX1-221ENST00000622516 TCP1P17987 556 aaKnown RBP11.56□□□□□ -0.56
CUX1-221ENST00000622516 MUTP22033 750 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 STAT1P42224 750 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 IRX3P78415 501 aaPredicted RBP11.56□□□□□ -0.56
CUX1-221ENST00000622516 CNTN2Q02246 1040 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 CBWD2Q8IUF1 395 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 REPS2Q8NFH8 660 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 NEK9Q8TD19 979 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 CCDC102AQ96A19 550 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 GPR88Q9GZN0 384 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 AS3MTQ9HBK9 375 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 UBE2TQ9NPD8 197 aaPredicted RBP11.56□□□□□ -0.56
CUX1-221ENST00000622516 OSGEPQ9NPF4 335 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 LUC7LQ9NQ29 371 aaKnown RBP11.56□□□□□ -0.56
CUX1-221ENST00000622516 TAS2R14Q9NYV8 317 aa11.56□□□□□ -0.56
CUX1-221ENST00000622516 ESYT3A0FGR9 886 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 SP2Q02086 613 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 WDR93Q6P2C0 686 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.55□□□□□ -0.56
CUX1-221ENST00000622516 NIPA1Q7RTP0 329 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 ZNF526Q8TF50 670 aaPredicted RBP11.55□□□□□ -0.56
CUX1-221ENST00000622516 RIN2Q8WYP3 895 aaPredicted RBP11.55□□□□□ -0.56
CUX1-221ENST00000622516 MOV10L1Q9BXT6 1211 aaKnown RBP11.55□□□□□ -0.56
CUX1-221ENST00000622516 GPRC5DQ9NZD1 345 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 DBR1Q9UK59 544 aaKnown RBP11.55□□□□□ -0.56
CUX1-221ENST00000622516 PCDHA10Q9Y5I2 948 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 KIAA1217Q5T5P2 1943 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 KCNK3O14649 394 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 DDNO94850 711 aaPredicted RBP11.55□□□□□ -0.56
CUX1-221ENST00000622516 KRT13P13646 458 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 CCND2P30279 289 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 ADSSP30520 456 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 SOX5P35711 763 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 PAFAH1B1P43034 410 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 VAMP7P51809 220 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 FAM193AP78312 1265 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 MAP2K1Q02750 393 aaPredicted RBP11.55□□□□□ -0.56
CUX1-221ENST00000622516 TREML2Q5T2D2 321 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 CYFIP1Q7L576 1253 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 ARHGEF19Q8IW93 802 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 CCDC60Q8IWA6 550 aaPredicted RBP11.55□□□□□ -0.56
CUX1-221ENST00000622516 C4orf19Q8IY42 314 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 ACCSQ96QU6 501 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 MKNK1Q9BUB5 465 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 R3HDMLQ9H3Y0 253 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 CYP39A1Q9NYL5 469 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 ZNF112Q9UJU3 913 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 DENND3A2RUS2 1198 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 ATP8B1O43520 1251 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 ADRB2P07550 413 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 270.3 ms