RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 GRIK1P39086 918 aa12.18□□□□□ -0.46
CLIP1-219ENST00000620786 TOB2Q14106 344 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-219ENST00000620786 KRT31Q15323 416 aa12.18□□□□□ -0.46
CLIP1-219ENST00000620786 PDZD8Q8NEN9 1154 aa12.18□□□□□ -0.46
CLIP1-219ENST00000620786 GTF3C2Q8WUA4 911 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-219ENST00000620786 DYRK4Q9NR20 520 aa12.18□□□□□ -0.46
CLIP1-219ENST00000620786 STAP1Q9ULZ2 295 aa12.18□□□□□ -0.46
CLIP1-219ENST00000620786 RNF17Q9BXT8 1623 aaKnown RBP12.18□□□□□ -0.46
CLIP1-219ENST00000620786 KDM6AO15550 1401 aaPredicted RBP12.17□□□□□ -0.46
CLIP1-219ENST00000620786 CDC42BPAQ5VT25 1732 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 GNGT2O14610 69 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 CHEK2O96017 543 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 APOEP02649 317 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 ORC2Q13416 577 aaPredicted RBP12.17□□□□□ -0.46
CLIP1-219ENST00000620786 DRP2Q13474 957 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 NUDT18Q6ZVK8 323 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 NEDD1Q8NHV4 660 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 CAPS2Q9BXY5 557 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 FLT1P17948 1338 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 PAPOLAP51003 745 aaKnown RBP12.17□□□□□ -0.46
CLIP1-219ENST00000620786 APBA1Q02410 837 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 BTBD8Q5XKL5 378 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 SPATA2LQ8IUW3 424 aaPredicted RBP12.17□□□□□ -0.46
CLIP1-219ENST00000620786 MB21D2Q8IYB1 491 aaPredicted RBP12.17□□□□□ -0.46
CLIP1-219ENST00000620786 RNF149Q8NC42 400 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 AP1M1Q9BXS5 423 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 RBAKQ9NYW8 714 aaPredicted RBP12.17□□□□□ -0.46
CLIP1-219ENST00000620786 LCMT1Q9UIC8 334 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 CDC23Q9UJX2 597 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 ORC4O43929 436 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 HIP1RO75146 1068 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 PRKCBP05771 671 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 YWHABP31946 246 aaKnown RBP12.17□□□□□ -0.46
CLIP1-219ENST00000620786 DR1Q01658 176 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 LPAR1Q92633 364 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 NSUN4Q96CB9 384 aaKnown RBP12.17□□□□□ -0.46
CLIP1-219ENST00000620786 FGD4Q96M96 766 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 TEX13BQ9BXU2 312 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 NRBP1Q9UHY1 535 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 CEP152O94986 1710 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 CAMTA2O94983 1202 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 TDP2O95551 362 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 ESRRBO95718 433 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 GNA15P30679 374 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 CDR2Q01850 454 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 CACNB2Q08289 660 aaPredicted RBP12.17□□□□□ -0.46
CLIP1-219ENST00000620786 ALX1Q15699 326 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 KNOP1Q1ED39 458 aaKnown RBP12.17□□□□□ -0.46
CLIP1-219ENST00000620786 CDC42EP5Q6NZY7 148 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 BARGINQ6ZT62 677 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 PGBD4Q96DM1 585 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 TBK1Q9UHD2 729 aa12.17□□□□□ -0.46
CLIP1-219ENST00000620786 TADA2AO75478 443 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 RARBP10826 455 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 CA4P22748 312 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 SDC4P31431 198 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 IFNAR2P48551 515 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.16□□□□□ -0.46
CLIP1-219ENST00000620786 HP1BP3Q5SSJ5 553 aaPredicted RBP12.16□□□□□ -0.46
CLIP1-219ENST00000620786 INTS9Q9NV88 658 aaKnown RBP12.16□□□□□ -0.46
CLIP1-219ENST00000620786 SLC13A4Q9UKG4 626 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 HEY1Q9Y5J3 304 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 TRIM49BA6NDI0 452 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 TFRCP02786 760 aaKnown RBP12.16□□□□□ -0.46
CLIP1-219ENST00000620786 USP11P51784 963 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 RCAN1P53805 252 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 MUM1Q2TAK8 710 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 ALKBH5Q6P6C2 394 aaKnown RBP12.16□□□□□ -0.46
CLIP1-219ENST00000620786 CENPUQ71F23 418 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 STAG2Q8N3U4 1231 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 PYROXD1Q8WU10 500 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 GGPS1O95749 300 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 CUL4AQ13619 759 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 C12orf60Q5U649 245 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 FAM117BQ6P1L5 589 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 DDX53Q86TM3 631 aaKnown RBP12.16□□□□□ -0.46
CLIP1-219ENST00000620786 SRRM1Q8IYB3 904 aaKnown RBP12.16□□□□□ -0.46
CLIP1-219ENST00000620786 MARCH10Q8NA82 808 aaPredicted RBP12.16□□□□□ -0.46
CLIP1-219ENST00000620786 ASIC4Q96FT7 647 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 RBM41Q96IZ5 413 aaKnown RBP12.16□□□□□ -0.46
CLIP1-219ENST00000620786 INTS2Q9H0H0 1204 aaKnown RBP12.16□□□□□ -0.46
CLIP1-219ENST00000620786 CEP72Q9P209 647 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 BAIAP2L1Q9UHR4 511 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 AGO2Q9UKV8 859 aaKnown RBP12.16□□□□□ -0.46
CLIP1-219ENST00000620786 TRPM1Q7Z4N2 1603 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 TRAPPC3O43617 180 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 SNX2O60749 519 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 LCP1P13796 627 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 TAC1P20366 129 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 KCTD16Q68DU8 428 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 PHLDB3Q6NSJ2 640 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 PROM2Q8N271 834 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 SPDL1Q96EA4 605 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 VPS39Q96JC1 886 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 SCAF8Q9UPN6 1271 aaKnown RBP12.16□□□□□ -0.46
CLIP1-219ENST00000620786 SPATA31A5Q5VU36 1347 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 SPATA31A7Q8IWB4 1347 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 CDC27P30260 824 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 EFNA5P52803 228 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 BAATQ14032 418 aaPredicted RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms