RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 VSIG10LQ86VR7 867 aa13.52□□□□□ -0.25
CIITA-212ENST00000618207 GLYCTKQ8IVS8 523 aa13.52□□□□□ -0.25
CIITA-212ENST00000618207 LUC7LQ9NQ29 371 aaKnown RBP13.52□□□□□ -0.25
CIITA-212ENST00000618207 HYOU1Q9Y4L1 999 aa13.52□□□□□ -0.25
CIITA-212ENST00000618207 ZNF862O60290 1169 aa13.51□□□□□ -0.25
CIITA-212ENST00000618207 PHACTR2O75167 634 aa13.51□□□□□ -0.25
CIITA-212ENST00000618207 ERLIN1O75477 346 aa13.51□□□□□ -0.25
CIITA-212ENST00000618207 RGS20O76081 388 aa13.51□□□□□ -0.25
CIITA-212ENST00000618207 KRT13P13646 458 aa13.51□□□□□ -0.25
CIITA-212ENST00000618207 PLS3P13797 630 aa13.51□□□□□ -0.25
CIITA-212ENST00000618207 APOBEC3FQ8IUX4 373 aaKnown RBP13.51□□□□□ -0.25
CIITA-212ENST00000618207 NEK9Q8TD19 979 aa13.51□□□□□ -0.25
CIITA-212ENST00000618207 POP1Q99575 1024 aaKnown RBP13.51□□□□□ -0.25
CIITA-212ENST00000618207 KCND2Q9NZV8 630 aa13.51□□□□□ -0.25
CIITA-212ENST00000618207 NAGPAQ9UK23 515 aa13.51□□□□□ -0.25
CIITA-212ENST00000618207 CD2APQ9Y5K6 639 aa13.51□□□□□ -0.25
CIITA-212ENST00000618207 PJA2O43164 708 aa13.51□□□□□ -0.25
CIITA-212ENST00000618207 OAS2P29728 719 aaKnown RBP13.51□□□□□ -0.25
CIITA-212ENST00000618207 TREML2Q5T2D2 321 aa13.51□□□□□ -0.25
CIITA-212ENST00000618207 SEPT14Q6ZU15 432 aa13.51□□□□□ -0.25
CIITA-212ENST00000618207 LRRC1Q9BTT6 524 aa13.51□□□□□ -0.25
CIITA-212ENST00000618207 PDE11AQ9HCR9 933 aa13.51□□□□□ -0.25
CIITA-212ENST00000618207 SEPT9Q9UHD8 586 aaPredicted RBP13.51□□□□□ -0.25
CIITA-212ENST00000618207 PCDHA10Q9Y5I2 948 aa13.51□□□□□ -0.25
CIITA-212ENST00000618207 ADM5C9JUS6 153 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 PPP1R37O75864 691 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 MYBL2P10244 700 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 MUTP22033 750 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 STAT1P42224 750 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 PPP3CAQ08209 521 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 NAB2Q15742 525 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 MOB2Q70IA6 237 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 CYFIP1Q7L576 1253 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 NIPA1Q7RTP0 329 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 NSUN6Q8TEA1 469 aaKnown RBP13.5□□□□□ -0.25
CIITA-212ENST00000618207 PAGR1Q9BTK6 254 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 TEX13BQ9BXU2 312 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 INTS2Q9H0H0 1204 aaKnown RBP13.5□□□□□ -0.25
CIITA-212ENST00000618207 FAM53CQ9NYF3 392 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 HSPBP1Q9NZL4 362 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 RAB21Q9UL25 225 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 ANKRD63C9JTQ0 380 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 POTEB2H3BUK9 544 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 RBAK-RBAKDNI3L0D1 243 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 N4BP1O75113 896 aaKnown RBP13.5□□□□□ -0.25
CIITA-212ENST00000618207 PHLDB3Q6NSJ2 640 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 ZNF771Q7L3S4 317 aaPredicted RBP13.5□□□□□ -0.25
CIITA-212ENST00000618207 CBWD2Q8IUF1 395 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 CCDC60Q8IWA6 550 aaPredicted RBP13.5□□□□□ -0.25
CIITA-212ENST00000618207 ANKRD35Q8N283 1001 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 KCTD17Q8N5Z5 321 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 PROCA1Q8NCQ7 364 aaPredicted RBP13.5□□□□□ -0.25
CIITA-212ENST00000618207 SPATA4Q8NEY3 305 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 REPS2Q8NFH8 660 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 BSNDQ8WZ55 320 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 KAT5Q92993 513 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 ACCSQ96QU6 501 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 SGIP1Q9BQI5 828 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 UBE2TQ9NPD8 197 aaPredicted RBP13.5□□□□□ -0.25
CIITA-212ENST00000618207 ACP6Q9NPH0 428 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 DMAC2Q9NW81 257 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 CYP39A1Q9NYL5 469 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 CHORDC1Q9UHD1 332 aaPredicted RBP13.5□□□□□ -0.25
CIITA-212ENST00000618207 DMGDHQ9UI17 866 aaKnown RBP13.5□□□□□ -0.25
CIITA-212ENST00000618207 ZNF112Q9UJU3 913 aa13.5□□□□□ -0.25
CIITA-212ENST00000618207 DENND3A2RUS2 1198 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 SPDYE16A6NNV3 312 aaPredicted RBP13.49□□□□□ -0.25
CIITA-212ENST00000618207 DDX3XO00571 662 aaKnown RBP eCLIP13.49□□□□□ -0.25
CIITA-212ENST00000618207 PAFAH1B1P43034 410 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 KRT76Q01546 638 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 VGLL4Q14135 290 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 MTERF2Q49AM1 385 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 CATSPERGQ6ZRH7 1159 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 C4orf19Q8IY42 314 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 PLEKHO2Q8TD55 490 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 MOV10L1Q9BXT6 1211 aaKnown RBP13.49□□□□□ -0.25
CIITA-212ENST00000618207 DOCK1Q14185 1865 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 GRID2IPA4D2P6 1211 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 F8VZ95 297 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 FOXN3O00409 490 aaPredicted RBP13.49□□□□□ -0.25
CIITA-212ENST00000618207 NPTX2P47972 431 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 VAMP7P51809 220 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 JAK3P52333 1124 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 FAM193AP78312 1265 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 MAP2K1Q02750 393 aaPredicted RBP13.49□□□□□ -0.25
CIITA-212ENST00000618207 GADL1Q6ZQY3 521 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 PALB2Q86YC2 1186 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 ZNF526Q8TF50 670 aaPredicted RBP13.49□□□□□ -0.25
CIITA-212ENST00000618207 CCDC102AQ96A19 550 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 R3HDMLQ9H3Y0 253 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 ACAD9Q9H845 621 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 RBM12Q9NTZ6 932 aaKnown RBP13.49□□□□□ -0.25
CIITA-212ENST00000618207 DBR1Q9UK59 544 aaKnown RBP13.49□□□□□ -0.25
CIITA-212ENST00000618207 L1RE1Q9UN81 338 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 CLSTN1O94985 981 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 TCP1P17987 556 aaKnown RBP13.49□□□□□ -0.25
CIITA-212ENST00000618207 SP2Q02086 613 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 CASP8Q14790 479 aa13.49□□□□□ -0.25
CIITA-212ENST00000618207 ZNF746Q6NUN9 644 aaPredicted RBP13.49□□□□□ -0.25
CIITA-212ENST00000618207 ARHGEF19Q8IW93 802 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms