RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 MRE11P49959 708 aa28.05■■■□□ 2.08
PTPRF-216ENST00000617451 SSRP1Q08945 709 aaKnown RBP28.05■■■□□ 2.08
PTPRF-216ENST00000617451 MTERF2Q49AM1 385 aa28.05■■■□□ 2.08
PTPRF-216ENST00000617451 LLGL2Q6P1M3 1020 aa28.05■■■□□ 2.08
PTPRF-216ENST00000617451 SLC39A11Q8N1S5 342 aa28.05■■■□□ 2.08
PTPRF-216ENST00000617451 HELQQ8TDG4 1101 aa28.05■■■□□ 2.08
PTPRF-216ENST00000617451 PBXIP1Q96AQ6 731 aa28.05■■■□□ 2.08
PTPRF-216ENST00000617451 MBOAT7Q96N66 472 aa28.05■■■□□ 2.08
PTPRF-216ENST00000617451 GCOM2Q9BZD3 368 aaPredicted RBP28.05■■■□□ 2.08
PTPRF-216ENST00000617451 ZSWIM6Q9HCJ5 1215 aa28.05■■■□□ 2.08
PTPRF-216ENST00000617451 ZDBF2Q9HCK1 2354 aa28.05■■■□□ 2.08
PTPRF-216ENST00000617451 CHST12Q9NRB3 414 aa28.05■■■□□ 2.08
PTPRF-216ENST00000617451 TMEM150BA6NC51 233 aa28.04■■■□□ 2.08
PTPRF-216ENST00000617451 HOXB8P17481 243 aaPredicted RBP28.04■■■□□ 2.08
PTPRF-216ENST00000617451 BLIDQ8IZY5 108 aa28.04■■■□□ 2.08
PTPRF-216ENST00000617451 MRPL43Q8N983 215 aaKnown RBP28.04■■■□□ 2.08
PTPRF-216ENST00000617451 DEXIO95424 95 aa28.03■■■□□ 2.08
PTPRF-216ENST00000617451 DNM2P50570 870 aa28.03■■■□□ 2.08
PTPRF-216ENST00000617451 NPY5RQ15761 445 aa28.03■■■□□ 2.08
PTPRF-216ENST00000617451 MOXD1Q6UVY6 613 aa28.03■■■□□ 2.08
PTPRF-216ENST00000617451 DAGLBQ8NCG7 672 aa28.03■■■□□ 2.08
PTPRF-216ENST00000617451 ETNPPLQ8TBG4 499 aa28.03■■■□□ 2.08
PTPRF-216ENST00000617451 TRAIPQ9BWF2 469 aa28.03■■■□□ 2.08
PTPRF-216ENST00000617451 MRPL9Q9BYD2 267 aaKnown RBP28.03■■■□□ 2.08
PTPRF-216ENST00000617451 A0A087WZ62 844 aa28.02■■■□□ 2.08
PTPRF-216ENST00000617451 C2orf71A6NGG8 1288 aa28.02■■■□□ 2.08
PTPRF-216ENST00000617451 SMC1AQ14683 1233 aaKnown RBP28.02■■■□□ 2.08
PTPRF-216ENST00000617451 ZNF274Q96GC6 653 aaPredicted RBP28.02■■■□□ 2.08
PTPRF-216ENST00000617451 SH2D3AQ9BRG2 576 aa28.02■■■□□ 2.08
PTPRF-216ENST00000617451 FDXACB1Q9BRP7 624 aaPredicted RBP28.02■■■□□ 2.08
PTPRF-216ENST00000617451 APOL5Q9BWW9 433 aa28.02■■■□□ 2.08
PTPRF-216ENST00000617451 CPLX1O14810 134 aa28.01■■■□□ 2.07
PTPRF-216ENST00000617451 EPB41L2O43491 1005 aaKnown RBP28.01■■■□□ 2.07
PTPRF-216ENST00000617451 PHKA2P46019 1235 aa28.01■■■□□ 2.07
PTPRF-216ENST00000617451 ALDH7A1P49419 539 aaKnown RBP28.01■■■□□ 2.07
PTPRF-216ENST00000617451 BCAR1P56945 870 aa28.01■■■□□ 2.07
PTPRF-216ENST00000617451 SIGLEC14Q08ET2 396 aa28.01■■■□□ 2.07
PTPRF-216ENST00000617451 GALNT17Q6IS24 598 aa28.01■■■□□ 2.07
PTPRF-216ENST00000617451 FAM177A1Q8N128 213 aaPredicted RBP28.01■■■□□ 2.07
PTPRF-216ENST00000617451 CASP10Q92851 521 aa28.01■■■□□ 2.07
PTPRF-216ENST00000617451 SUCLA2Q9P2R7 463 aaPredicted RBP28.01■■■□□ 2.07
PTPRF-216ENST00000617451 CYP46A1Q9Y6A2 500 aa28.01■■■□□ 2.07
PTPRF-216ENST00000617451 DDX11L8A8MPP1 907 aa28■■■□□ 2.07
PTPRF-216ENST00000617451 MAFO75444 373 aaPredicted RBP28■■■□□ 2.07
PTPRF-216ENST00000617451 SFPQP23246 707 aaKnown RBP eCLIP28■■■□□ 2.073e-6■■□□□ 13
PTPRF-216ENST00000617451 IER5LQ5T953 404 aa28■■■□□ 2.07
PTPRF-216ENST00000617451 ZNF410Q86VK4 478 aa28■■■□□ 2.07
PTPRF-216ENST00000617451 RSPH1Q8WYR4 309 aa28■■■□□ 2.07
PTPRF-216ENST00000617451 HCFC2Q9Y5Z7 792 aa28■■■□□ 2.07
PTPRF-216ENST00000617451 NT5C1B-RDH14C9J2C7 533 aa27.99■■■□□ 2.07
PTPRF-216ENST00000617451 PTPN21Q16825 1174 aa27.99■■■□□ 2.07
PTPRF-216ENST00000617451 TPRNQ4KMQ1 711 aa27.99■■■□□ 2.07
PTPRF-216ENST00000617451 ANO5Q75V66 913 aa27.99■■■□□ 2.07
PTPRF-216ENST00000617451 RHPN2Q8IUC4 686 aa27.99■■■□□ 2.07
PTPRF-216ENST00000617451 SUGP1Q8IWZ8 645 aaKnown RBP27.99■■■□□ 2.07
PTPRF-216ENST00000617451 FBXL6Q8N531 539 aa27.99■■■□□ 2.07
PTPRF-216ENST00000617451 AIFM3Q96NN9 605 aa27.99■■■□□ 2.07
PTPRF-216ENST00000617451 LARP6Q9BRS8 491 aaKnown RBP27.99■■■□□ 2.07
PTPRF-216ENST00000617451 INO80BQ9C086 356 aaPredicted RBP27.99■■■□□ 2.07
PTPRF-216ENST00000617451 DDX25Q9UHL0 483 aaKnown RBP27.99■■■□□ 2.07
PTPRF-216ENST00000617451 CLASP2O75122 1294 aaKnown RBP27.98■■■□□ 2.07
PTPRF-216ENST00000617451 SKIP12755 728 aa27.98■■■□□ 2.07
PTPRF-216ENST00000617451 PSMC5P62195 406 aa27.98■■■□□ 2.07
PTPRF-216ENST00000617451 NONOQ15233 471 aaKnown RBP eCLIP27.98■■■□□ 2.07
PTPRF-216ENST00000617451 TWF2Q6IBS0 349 aaKnown RBP27.98■■■□□ 2.07
PTPRF-216ENST00000617451 PRSS33Q8NF86 280 aa27.98■■■□□ 2.07
PTPRF-216ENST00000617451 ASIC4Q96FT7 647 aa27.98■■■□□ 2.07
PTPRF-216ENST00000617451 TMEM169Q96HH4 297 aa27.98■■■□□ 2.07
PTPRF-216ENST00000617451 TM6SF1Q9BZW5 370 aa27.98■■■□□ 2.07
PTPRF-216ENST00000617451 CXCL14O95715 111 aa27.97■■■□□ 2.07
PTPRF-216ENST00000617451 BMS1Q14692 1282 aaKnown RBP27.97■■■□□ 2.07
PTPRF-216ENST00000617451 INF2Q27J81 1249 aa27.97■■■□□ 2.07
PTPRF-216ENST00000617451 CPLX2Q6PUV4 134 aaKnown RBP27.97■■■□□ 2.07
PTPRF-216ENST00000617451 KRT25Q7Z3Z0 450 aa27.97■■■□□ 2.07
PTPRF-216ENST00000617451 KSR1Q8IVT5 923 aa27.97■■■□□ 2.07
PTPRF-216ENST00000617451 LPPQ93052 612 aa27.97■■■□□ 2.07
PTPRF-216ENST00000617451 JPH2Q9BR39 696 aaPredicted RBP27.97■■■□□ 2.07
PTPRF-216ENST00000617451 ADAM7Q9H2U9 754 aa27.97■■■□□ 2.07
PTPRF-216ENST00000617451 CDH22Q9UJ99 828 aa27.97■■■□□ 2.07
PTPRF-216ENST00000617451 PIN4Q9Y237 131 aaKnown RBP27.97■■■□□ 2.07
PTPRF-216ENST00000617451 EML1O00423 815 aa27.96■■■□□ 2.07
PTPRF-216ENST00000617451 SLC37A4O43826 429 aa27.96■■■□□ 2.07
PTPRF-216ENST00000617451 ZNF623O75123 536 aa27.96■■■□□ 2.07
PTPRF-216ENST00000617451 ZC3H11AO75152 810 aaKnown RBP eCLIP27.96■■■□□ 2.07
PTPRF-216ENST00000617451 ITIH3Q06033 890 aa27.96■■■□□ 2.07
PTPRF-216ENST00000617451 STK3Q13188 491 aa27.96■■■□□ 2.07
PTPRF-216ENST00000617451 CES5AQ6NT32 575 aa27.96■■■□□ 2.07
PTPRF-216ENST00000617451 TMEM173Q86WV6 379 aaPredicted RBP27.96■■■□□ 2.07
PTPRF-216ENST00000617451 VPS52Q8N1B4 723 aa27.96■■■□□ 2.07
PTPRF-216ENST00000617451 PRRX2Q99811 253 aa27.96■■■□□ 2.07
PTPRF-216ENST00000617451 FAM105AQ9NUU6 356 aa27.96■■■□□ 2.07
PTPRF-216ENST00000617451 CARNS1A5YM72 827 aa27.95■■■□□ 2.06
PTPRF-216ENST00000617451 SP100P23497 879 aaPredicted RBP27.95■■■□□ 2.06
PTPRF-216ENST00000617451 PPP2R5CQ13362 524 aa27.95■■■□□ 2.06
PTPRF-216ENST00000617451 LONRF3Q496Y0 759 aa27.95■■■□□ 2.06
PTPRF-216ENST00000617451 PLA2G4FQ68DD2 849 aa27.95■■■□□ 2.06
PTPRF-216ENST00000617451 GLB1LQ6UWU2 654 aa27.95■■■□□ 2.06
PTPRF-216ENST00000617451 CATSPER4Q7RTX7 472 aa27.95■■■□□ 2.06
PTPRF-216ENST00000617451 NLRP4Q96MN2 994 aa27.95■■■□□ 2.06
PTPRF-216ENST00000617451 NECTIN4Q96NY8 510 aa27.95■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms