RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 LIG3P49916 1009 aa9.62□□□□□ -0.87
PDLIM5-222ENST00000615540 HADHQ16836 314 aaKnown RBP9.62□□□□□ -0.87
PDLIM5-222ENST00000615540 CYP4F22Q6NT55 531 aa9.62□□□□□ -0.87
PDLIM5-222ENST00000615540 DNAJC24Q6P3W2 148 aa9.62□□□□□ -0.87
PDLIM5-222ENST00000615540 ADPGKQ9BRR6 497 aa9.62□□□□□ -0.87
PDLIM5-222ENST00000615540 GPRC5CQ9NQ84 441 aa9.62□□□□□ -0.87
PDLIM5-222ENST00000615540 KCNH7Q9NS40 1196 aa9.62□□□□□ -0.87
PDLIM5-222ENST00000615540 HOXC10Q9NYD6 342 aa9.62□□□□□ -0.87
PDLIM5-222ENST00000615540 CNOT8Q9UFF9 292 aaKnown RBP9.62□□□□□ -0.87
PDLIM5-222ENST00000615540 CASP4P49662 377 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 ACOT2P49753 483 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 ITIH3Q06033 890 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 ZNF564Q8TBZ8 553 aaPredicted RBP9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 CPA5Q8WXQ8 436 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 MXRA8Q9BRK3 442 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 PI4K2AQ9BTU6 479 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 PACSIN1Q9BY11 444 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 ACAD9Q9H845 621 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 PDXKO00764 312 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 ZBTB39O15060 712 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 ALCAMQ13740 583 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 APOBEC3HQ6NTF7 200 aaKnown RBP9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 KCTD6Q8NC69 237 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 SLC35G2Q8TBE7 412 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 ATG4CQ96DT6 458 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 CDHR1Q96JP9 859 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 SPATA33Q96N06 139 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 C11orf70Q9BRQ4 267 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 JPH1Q9HDC5 661 aaPredicted RBP9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 GGA3Q9NZ52 723 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 ANAPC5Q9UJX4 755 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 ATP8B1O43520 1251 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 TFRCP02786 760 aaKnown RBP9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 COPB2P35606 906 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 KRT76Q01546 638 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 APOBEC3FQ8IUX4 373 aaKnown RBP9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 CTAGE3PQ8IX95 158 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 GPD1LQ8N335 351 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 C7orf31Q8N865 590 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 GLIS3Q8NEA6 775 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 RPF1Q9H9Y2 349 aaKnown RBP9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 STK38LQ9Y2H1 464 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 SPDYE2BA6NHP3 402 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 GOLGA8MH3BSY2 632 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 H7C0C1 242 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 TLR3O15455 904 aaKnown RBP9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 CTIFO43310 598 aaKnown RBP9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 ACSL3O95573 720 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 SPDYE6P0CI01 402 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 UCHL3P15374 230 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 CYP11B2P19099 503 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 STX2P32856 288 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 ARL1P40616 181 aaPredicted RBP9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 ATP5OP48047 213 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 SETDB1Q15047 1291 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 CABS1Q96KC9 395 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 RIOX1Q9H6W3 641 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 PNMA2Q9UL42 364 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 CAPN7Q9Y6W3 813 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 ADAMTS3O15072 1205 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 SLC16A3O15427 465 aaKnown RBP9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 GTF2A1P52655 376 aaPredicted RBP9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 ZNF131P52739 623 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 NME8Q8N427 588 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 NOA1Q8NC60 698 aaKnown RBP9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 CFAP36Q96G28 342 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 PNMA5Q96PV4 448 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 AGPAT1Q99943 283 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 FAM118BQ9BPY3 351 aa9.61□□□□□ -0.87
PDLIM5-222ENST00000615540 FMO5P49326 533 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 GPC5P78333 572 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 TERF2Q15554 542 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 EPC2Q52LR7 807 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 COG1Q8WTW3 980 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 PNKPQ96T60 521 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 KCNG1Q9UIX4 513 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 FAM86B1E9PN63 330 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 FAM86B2P0C5J1 330 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 PLS3P13797 630 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 SEZ6Q53EL9 994 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 OR6B2Q6IFH4 312 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 TTI2Q6NXR4 508 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 SLC10A4Q96EP9 437 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 BTBD6Q96KE9 485 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 RBM12Q9NTZ6 932 aaKnown RBP9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 SCN11AQ9UI33 1791 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 TMEM150BA6NC51 233 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 WDR46O15213 610 aaKnown RBP9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 GPC3P51654 580 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 NPEPPSP55786 919 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 GIT2Q14161 759 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 E2F4Q16254 413 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 CDKAL1Q5VV42 579 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 C1orf54Q8WWF1 131 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 KBTBD4Q9NVX7 518 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 MORC2Q9Y6X9 1032 aaPredicted RBP9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 ADAMTSL3P82987 1691 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 CLDN3O15551 220 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 ZNF18P17022 549 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 SMARCA1P28370 1054 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms