RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 GAS2O43903 313 aaKnown RBP15.68■□□□□ 0.1
USP39-220ENST00000613444 DUSP11O75319 330 aaKnown RBP15.68■□□□□ 0.1
USP39-220ENST00000613444 C22orf31O95567 290 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 F2P00734 622 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 NR3C1P04150 777 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 LINC01465Q8N7H1 131 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 TMEM174Q8WUU8 243 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 HVCN1Q96D96 273 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 ZBTB10Q96DT7 871 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 IFT74Q96LB3 600 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 ACCSQ96QU6 501 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 TMEM206Q9H813 350 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 AGPAT3Q9NRZ7 376 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 DMAC2Q9NW81 257 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 MAGEC2Q9UBF1 373 aaPredicted RBP15.68■□□□□ 0.1
USP39-220ENST00000613444 TBX20Q9UMR3 447 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 COL1A2P08123 1366 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 DENND3A2RUS2 1198 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 CLIC2O15247 247 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 ELNP15502 786 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 NAMPTP43490 491 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 IER5Q5VY09 327 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 CREBRFQ8IUR6 639 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 MAP4K3Q8IVH8 894 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 DRC7Q8IY82 874 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 EXOC8Q8IYI6 725 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 LRRC71Q8N4P6 559 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 ANKRD20A12PQ8NF67 263 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 DNAH12Q6ZR08 3092 aa15.68■□□□□ 0.1
USP39-220ENST00000613444 LGALS16A8MUM7 142 aa15.67■□□□□ 0.1
USP39-220ENST00000613444 N4BP3O15049 544 aa15.67■□□□□ 0.1
USP39-220ENST00000613444 CAPSQ13938 189 aa15.67■□□□□ 0.1
USP39-220ENST00000613444 ZNF296Q8WUU4 475 aaPredicted RBP15.67■□□□□ 0.1
USP39-220ENST00000613444 PRPF31Q8WWY3 499 aaKnown RBP15.67■□□□□ 0.1
USP39-220ENST00000613444 SCN10AQ9Y5Y9 1956 aa15.67■□□□□ 0.1
USP39-220ENST00000613444 TISP43B9A030 160 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 CETN3O15182 167 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 SEPT4O43236 478 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 AKAP3O75969 853 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 GNRH1P01148 92 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 TPM3P06753 285 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 HOXD10P28358 340 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 CPT1AP50416 773 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 GJA9P57773 515 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 NKX3-2P78367 333 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 BEX3Q00994 111 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 MARCH8Q5T0T0 291 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 MAP3K21Q5TCX8 1036 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 TMC6Q7Z403 805 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 SLC9A9Q8IVB4 645 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 AP5M1Q9H0R1 490 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 SUGCTQ9HAC7 445 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 KCNG1Q9UIX4 513 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 MYADML2A6NDP7 307 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 HAS3O00219 553 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 FKTNO75072 461 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 GNA14O95837 355 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 KLRC1P26715 233 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 MTIF2P46199 727 aaKnown RBP15.66■□□□□ 0.1
USP39-220ENST00000613444 CASP4P49662 377 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 PPP2R5AQ15172 486 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 FSCN1Q16658 493 aaKnown RBP15.66■□□□□ 0.1
USP39-220ENST00000613444 FILIP1LQ4L180 1135 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 HS1BP3Q53T59 392 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 EFCAB12Q6NXP0 572 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 HS2ST1Q7LGA3 356 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 CCDC186Q7Z3E2 898 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 C12orf56Q8IXR9 622 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 GOLGA5Q8TBA6 731 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 TCP11Q8WWU5 503 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 ERO1AQ96HE7 468 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 JPH2Q9BR39 696 aaPredicted RBP15.66■□□□□ 0.1
USP39-220ENST00000613444 UPF3AQ9H1J1 476 aaKnown RBP15.66■□□□□ 0.1
USP39-220ENST00000613444 IMPACTQ9P2X3 320 aa15.66■□□□□ 0.1
USP39-220ENST00000613444 ADCY3O60266 1144 aa15.65■□□□□ 0.1
USP39-220ENST00000613444 RPL13P26373 211 aaKnown RBP15.65■□□□□ 0.1
USP39-220ENST00000613444 CCND3P30281 292 aaPredicted RBP15.65■□□□□ 0.1
USP39-220ENST00000613444 IGBP1P78318 339 aa15.65■□□□□ 0.1
USP39-220ENST00000613444 LAMTOR4Q0VGL1 99 aa15.65■□□□□ 0.1
USP39-220ENST00000613444 TBX2Q13207 712 aaPredicted RBP15.65■□□□□ 0.1
USP39-220ENST00000613444 MYBPC2Q14324 1141 aa15.65■□□□□ 0.1
USP39-220ENST00000613444 SLC39A4Q6P5W5 647 aa15.65■□□□□ 0.1
USP39-220ENST00000613444 TRIM59Q8IWR1 403 aa15.65■□□□□ 0.1
USP39-220ENST00000613444 SYCP3Q8IZU3 236 aa15.65■□□□□ 0.1
USP39-220ENST00000613444 BORCS6Q96GS4 357 aa15.65■□□□□ 0.1
USP39-220ENST00000613444 H0YCG3 227 aa15.65■□□□□ 0.1
USP39-220ENST00000613444 MAGEB2O15479 319 aa15.65■□□□□ 0.1
USP39-220ENST00000613444 PTMAP06454 111 aaKnown RBP15.65■□□□□ 0.1
USP39-220ENST00000613444 PRKAR2AP13861 404 aaKnown RBP15.65■□□□□ 0.1
USP39-220ENST00000613444 PRKCSHP14314 528 aaPredicted RBP15.65■□□□□ 0.1
USP39-220ENST00000613444 ADSSP30520 456 aa15.65■□□□□ 0.1
USP39-220ENST00000613444 CLCN3P51790 818 aa15.65■□□□□ 0.1
USP39-220ENST00000613444 SNRPFP62306 86 aaKnown RBP15.65■□□□□ 0.1
USP39-220ENST00000613444 PPFIA1Q13136 1202 aa15.65■□□□□ 0.1
USP39-220ENST00000613444 GRIK4Q16099 956 aa15.65■□□□□ 0.1
USP39-220ENST00000613444 MAN2A1Q16706 1144 aa15.65■□□□□ 0.1
USP39-220ENST00000613444 CDCA2Q69YH5 1023 aaPredicted RBP15.65■□□□□ 0.1
USP39-220ENST00000613444 PXYLP1Q8TE99 480 aa15.65■□□□□ 0.1
USP39-220ENST00000613444 PSPC1Q8WXF1 523 aaKnown RBP15.65■□□□□ 0.1
USP39-220ENST00000613444 NOC4LQ9BVI4 516 aaKnown RBP15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms