RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 C4orf19Q8IY42 314 aa12.88□□□□□ -0.35
LINC00539-204ENST00000608957 SLFN12Q8IYM2 578 aa12.88□□□□□ -0.35
LINC00539-204ENST00000608957 CMTR2Q8IYT2 770 aaKnown RBP12.88□□□□□ -0.35
LINC00539-204ENST00000608957 ATXN2LQ8WWM7 1075 aaKnown RBP12.88□□□□□ -0.35
LINC00539-204ENST00000608957 MRPL38Q96DV4 380 aaKnown RBP12.88□□□□□ -0.35
LINC00539-204ENST00000608957 EIF2AK1Q9BQI3 630 aaKnown RBP12.88□□□□□ -0.35
LINC00539-204ENST00000608957 RCOR1Q9UKL0 485 aa12.88□□□□□ -0.35
LINC00539-204ENST00000608957 CLIC4Q9Y696 253 aa12.88□□□□□ -0.35
LINC00539-204ENST00000608957 A0A087WZ62 844 aa12.87□□□□□ -0.35
LINC00539-204ENST00000608957 DENND3A2RUS2 1198 aa12.87□□□□□ -0.35
LINC00539-204ENST00000608957 GRM6O15303 877 aa12.87□□□□□ -0.35
LINC00539-204ENST00000608957 NEMFO60524 1076 aa12.87□□□□□ -0.35
LINC00539-204ENST00000608957 GADD45BO75293 160 aaPredicted RBP12.87□□□□□ -0.35
LINC00539-204ENST00000608957 SLITRK3O94933 977 aa12.87□□□□□ -0.35
LINC00539-204ENST00000608957 STAG3L1P0CL83 205 aa12.87□□□□□ -0.35
LINC00539-204ENST00000608957 ATP2B1P20020 1258 aa12.87□□□□□ -0.35
LINC00539-204ENST00000608957 TRAPPC10P48553 1259 aa12.87□□□□□ -0.35
LINC00539-204ENST00000608957 TOB1P50616 345 aaPredicted RBP12.87□□□□□ -0.35
LINC00539-204ENST00000608957 SF3A1Q15459 793 aaKnown RBP12.87□□□□□ -0.35
LINC00539-204ENST00000608957 SKIV2LQ15477 1246 aaKnown RBP12.87□□□□□ -0.35
LINC00539-204ENST00000608957 KLHL40Q2TBA0 621 aa12.87□□□□□ -0.35
LINC00539-204ENST00000608957 TJAP1Q5JTD0 557 aa12.87□□□□□ -0.35
LINC00539-204ENST00000608957 LINC00301Q8NCQ3 95 aa12.87□□□□□ -0.35
LINC00539-204ENST00000608957 KCNG4Q8TDN1 519 aa12.87□□□□□ -0.35
LINC00539-204ENST00000608957 NLRP7Q8WX94 980 aa12.87□□□□□ -0.35
LINC00539-204ENST00000608957 ASB2Q96Q27 587 aa12.87□□□□□ -0.35
LINC00539-204ENST00000608957 FDXACB1Q9BRP7 624 aaPredicted RBP12.87□□□□□ -0.35
LINC00539-204ENST00000608957 DHX33Q9H6R0 707 aaKnown RBP12.87□□□□□ -0.35
LINC00539-204ENST00000608957 TTC12Q9H892 705 aaPredicted RBP12.87□□□□□ -0.35
LINC00539-204ENST00000608957 C1orf112Q9NSG2 853 aa12.87□□□□□ -0.35
LINC00539-204ENST00000608957 BMP2KQ9NSY1 1161 aaPredicted RBP12.87□□□□□ -0.35
LINC00539-204ENST00000608957 A0A087WWV3 80 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 POTEMA6NI47 508 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 MARCH6O60337 910 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 FGFR1P11362 822 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 ATF7P17544 494 aaPredicted RBP12.86□□□□□ -0.35
LINC00539-204ENST00000608957 DNAJB1P25685 340 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 YWHABP31946 246 aaKnown RBP12.86□□□□□ -0.35
LINC00539-204ENST00000608957 MCM7P33993 719 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 TXKP42681 527 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 KCNQ1P51787 676 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 MRPS5P82675 430 aaKnown RBP12.86□□□□□ -0.35
LINC00539-204ENST00000608957 CAMK1Q14012 370 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 ZNF174Q15697 407 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 ODR4Q5SWX8 454 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 SLC24A5Q71RS6 500 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 RHPN2Q8IUC4 686 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 GPT2Q8TD30 523 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 CEP170P1Q96L14 293 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 HSD17B14Q9BPX1 270 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 XPNPEP1Q9NQW7 623 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 SUCLA2Q9P2R7 463 aaPredicted RBP12.86□□□□□ -0.35
LINC00539-204ENST00000608957 PCDHA12Q9UN75 941 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 PCDHB7Q9Y5E2 793 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 XIRP2A4UGR9 3374 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 TTC28Q96AY4 2481 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 NCOR1O75376 2440 aa12.86□□□□□ -0.35
LINC00539-204ENST00000608957 GOLGA6L4A6NEF3 574 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 TBKBP1A7MCY6 615 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 SPTLC2O15270 562 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 LYPLA2O95372 231 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 ITGB1P05556 798 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 RB1P06400 928 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 SPATA31C1P0DKV0 1188 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 BMP1P13497 986 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 SLC39A14Q15043 492 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 PTPAQ15257 358 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 TCEAL5Q5H9L2 206 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 TTC38Q5R3I4 469 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 ECHDC2Q86YB7 292 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 TPH2Q8IWU9 490 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 C4orf32Q8N8J7 132 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 TMEM143Q96AN5 459 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 NLRP4Q96MN2 994 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 ANP32EQ9BTT0 268 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 GCOM2Q9BZD3 368 aaPredicted RBP12.85□□□□□ -0.35
LINC00539-204ENST00000608957 CWH43Q9H720 699 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 ELAC1Q9H777 363 aaKnown RBP12.85□□□□□ -0.35
LINC00539-204ENST00000608957 ZSWIM4Q9H7M6 989 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 MINDY3Q9H8M7 445 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 IFT122Q9HBG6 1241 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 TMEM161AQ9NX61 479 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 LRFN2Q9ULH4 789 aa12.85□□□□□ -0.35
LINC00539-204ENST00000608957 TDRD15B5MCY1 1934 aaKnown RBP12.84□□□□□ -0.35
LINC00539-204ENST00000608957 MYH11P35749 1972 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.84□□□□□ -0.35
LINC00539-204ENST00000608957 DKC1O60832 514 aaKnown RBP eCLIP12.84□□□□□ -0.35
LINC00539-204ENST00000608957 PPP6R2O75170 966 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 MED24O75448 989 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 CSPG5O95196 566 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 BMP15O95972 392 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 ME1P48163 572 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 POLGP54098 1239 aaPredicted RBP12.84□□□□□ -0.35
LINC00539-204ENST00000608957 EMC2Q15006 297 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 XKR9Q5GH70 373 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 CLLU1OSQ5K130 101 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 LRRC55Q6ZSA7 311 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 ZNF598Q86UK7 904 aaKnown RBP12.84□□□□□ -0.35
LINC00539-204ENST00000608957 ZNF410Q86VK4 478 aa12.84□□□□□ -0.35
LINC00539-204ENST00000608957 ZNF710Q8N1W2 664 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms