RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 SLC27A2O14975 620 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 MGEA5O60502 916 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 DKC1O60832 514 aaKnown RBP eCLIP7.1□□□□□ -1.272e-7■■■■■ 38.7
CUX1-220ENST00000607092 GPR32O75388 356 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 CCNE2O96020 404 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 C1RP00736 705 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 DARSP14868 501 aaKnown RBP7.1□□□□□ -1.27
CUX1-220ENST00000607092 RXRAP19793 462 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 RFX1P22670 979 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 CA8P35219 290 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 CLK2P49760 499 aaKnown RBP7.1□□□□□ -1.27
CUX1-220ENST00000607092 GATMP50440 423 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 VCPP55072 806 aaKnown RBP7.1□□□□□ -1.27
CUX1-220ENST00000607092 NLRP11P59045 1033 aaKnown RBP7.1□□□□□ -1.27
CUX1-220ENST00000607092 RNASELQ05823 741 aaKnown RBP7.1□□□□□ -1.27
CUX1-220ENST00000607092 TBC1D8BQ0IIM8 1120 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 CREB3L3Q68CJ9 461 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 EFCAB12Q6NXP0 572 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 LLGL2Q6P1M3 1020 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 C15orf39Q6ZRI6 1047 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 CCDC149Q6ZUS6 474 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 DHX32Q7L7V1 743 aaKnown RBP7.1□□□□□ -1.27
CUX1-220ENST00000607092 CABP7Q86V35 215 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 ZNF410Q86VK4 478 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 ECHDC2Q86YB7 292 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 FAM177A1Q8N128 213 aaPredicted RBP7.1□□□□□ -1.27
CUX1-220ENST00000607092 CMTR1Q8N1G2 835 aaKnown RBP7.1□□□□□ -1.27
CUX1-220ENST00000607092 SLC39A11Q8N1S5 342 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 RNF169Q8NCN4 708 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 VN1R2Q8NFZ6 395 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 CYP2W1Q8TAV3 490 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 URGCPQ8TCY9 931 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 TMEM40Q8WWA1 233 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 NLRP7Q8WX94 980 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 STAMQ92783 540 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 NXPE3Q969Y0 559 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 YTHDC1Q96MU7 727 aaKnown RBP7.1□□□□□ -1.27
CUX1-220ENST00000607092 CASD1Q96PB1 797 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 RIT2Q99578 217 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 SFXN1Q9H9B4 322 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 UBN1Q9NPG3 1134 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 ANO2Q9NQ90 1003 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 CYP26B1Q9NR63 512 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 IGSF9Q9P2J2 1179 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 KANSL3Q9P2N6 904 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 DAXXQ9UER7 740 aaPredicted RBP7.1□□□□□ -1.27
CUX1-220ENST00000607092 PPME1Q9Y570 386 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 V9GY48 417 aaPredicted RBP7.1□□□□□ -1.27
CUX1-220ENST00000607092 DOCK5Q9H7D0 1870 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 DMDP11532 3685 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 CEP295Q9C0D2 2601 aa7.1□□□□□ -1.27
CUX1-220ENST00000607092 CNTNAP5Q8WYK1 1306 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 CNTNAP2Q9UHC6 1331 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 CHD8Q9HCK8 2581 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 IGLV3-22A0A075B6J6 115 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.09□□□□□ -1.27
CUX1-220ENST00000607092 hCG_1642624A0A1W2PR95 340 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 PRR23AA6NEV1 266 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 GOLGA8AA7E2F4 631 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 GOLGA8BA8MQT2 603 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 HIDE1A8MVS5 230 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 ZBTB42B2RXF5 422 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 FAM86B1E9PN63 330 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 DDX39AO00148 427 aaKnown RBP7.09□□□□□ -1.27
CUX1-220ENST00000607092 DHX15O43143 795 aaKnown RBP7.09□□□□□ -1.27
CUX1-220ENST00000607092 CLASP2O75122 1294 aaKnown RBP7.09□□□□□ -1.27
CUX1-220ENST00000607092 NR1I2O75469 434 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 CXCL14O95715 111 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 VTNP04004 478 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 OATP04181 439 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 FAM86B2P0C5J1 330 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 CTSAP10619 480 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 CIITAP33076 1130 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 USP11P51784 963 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 BCAR1P56945 870 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 NCBP1Q09161 790 aaKnown RBP7.09□□□□□ -1.27
CUX1-220ENST00000607092 APOBRQ0VD83 1088 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 NECTIN1Q15223 517 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 PCBP1Q15365 356 aaKnown RBP eCLIP7.09□□□□□ -1.27
CUX1-220ENST00000607092 PFKFB3Q16875 520 aaPredicted RBP7.09□□□□□ -1.27
CUX1-220ENST00000607092 XKR3Q5GH77 459 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 ZC3H14Q6PJT7 736 aaKnown RBP7.09□□□□□ -1.27
CUX1-220ENST00000607092 DDX53Q86TM3 631 aaKnown RBP7.09□□□□□ -1.27
CUX1-220ENST00000607092 CNNM3Q8NE01 707 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 EXOC6Q8TAG9 804 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 ZBTB10Q96DT7 871 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 ESYT1Q9BSJ8 1104 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 RHOBTB2Q9BYZ6 727 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 LSG1Q9H089 658 aaKnown RBP7.09□□□□□ -1.27
CUX1-220ENST00000607092 ZMYND12Q9H0C1 365 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 ADAMTS10Q9H324 1103 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 POMKQ9H5K3 350 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 CDHR5Q9HBB8 845 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 SLC24A3Q9HC58 644 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 DISC1Q9NRI5 854 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 GABBR1Q9UBS5 961 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 FBXL21Q9UKT6 434 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 PCDHGC5Q9Y5F6 944 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 ATG2AQ2TAZ0 1938 aa7.09□□□□□ -1.27
CUX1-220ENST00000607092 MYO15AQ9UKN7 3530 aa7.09□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms