RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 TRIM6Q9C030 488 aaPredicted RBP19.85■□□□□ 0.77
UPF1-210ENST00000600689 KDM4CQ9H3R0 1056 aa19.85■□□□□ 0.77
UPF1-210ENST00000600689 SLITRK6Q9H5Y7 841 aa19.85■□□□□ 0.77
UPF1-210ENST00000600689 ACSL3O95573 720 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 MAP2K1Q02750 393 aaPredicted RBP19.84■□□□□ 0.77
UPF1-210ENST00000600689 PDIA5Q14554 519 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 ARSHQ5FYA8 562 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 JAMLQ86YT9 394 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 CTNNBL1Q8WYA6 563 aaPredicted RBP19.84■□□□□ 0.77
UPF1-210ENST00000600689 ALG3Q92685 438 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 ZNF317Q96PQ6 595 aaPredicted RBP19.84■□□□□ 0.77
UPF1-210ENST00000600689 PNMA3Q9UL41 463 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 LACTB2Q53H82 288 aaPredicted RBP19.84■□□□□ 0.77
UPF1-210ENST00000600689 SEPT14Q6ZU15 432 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 ERP44Q9BS26 406 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 RAB17Q9H0T7 212 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 THAP2Q9H0W7 228 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 DDX4Q9NQI0 724 aaKnown RBP19.84■□□□□ 0.77
UPF1-210ENST00000600689 USP17L10C9JJH3 530 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 PPP1R11O60927 126 aaPredicted RBP19.84■□□□□ 0.77
UPF1-210ENST00000600689 GCKP35557 465 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 TNIP1Q15025 636 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 DPP8Q6V1X1 898 aaPredicted RBP19.84■□□□□ 0.77
UPF1-210ENST00000600689 CPNE8Q86YQ8 564 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 NEDD1Q8NHV4 660 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 TLCD1Q96CP7 247 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 SPDL1Q96EA4 605 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 FAXDC2Q96IV6 333 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 CRAMP1Q96RY5 1269 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 POP1Q99575 1024 aaKnown RBP19.84■□□□□ 0.77
UPF1-210ENST00000600689 ADAM7Q9H2U9 754 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 EPB41L4BQ9H329 900 aa19.84■□□□□ 0.77
UPF1-210ENST00000600689 CNOT10Q9H9A5 744 aaKnown RBP19.84■□□□□ 0.77
UPF1-210ENST00000600689 IGF2BP3O00425 579 aaKnown RBP eCLIP19.83■□□□□ 0.77
UPF1-210ENST00000600689 DNAJC8O75937 253 aaPredicted RBP19.83■□□□□ 0.77
UPF1-210ENST00000600689 TRIM49P0CI25 452 aa19.83■□□□□ 0.77
UPF1-210ENST00000600689 TRIM49CP0CI26 452 aa19.83■□□□□ 0.77
UPF1-210ENST00000600689 ATXN2LQ8WWM7 1075 aaKnown RBP19.83■□□□□ 0.77
UPF1-210ENST00000600689 REEP2Q9BRK0 252 aa19.83■□□□□ 0.77
UPF1-210ENST00000600689 ECT2Q9H8V3 914 aa19.83■□□□□ 0.77
UPF1-210ENST00000600689 ATP6V0A4Q9HBG4 840 aa19.83■□□□□ 0.77
UPF1-210ENST00000600689 SUCLA2Q9P2R7 463 aaPredicted RBP19.83■□□□□ 0.77
UPF1-210ENST00000600689 PCDHA2Q9Y5H9 948 aa19.83■□□□□ 0.77
UPF1-210ENST00000600689 GAKO14976 1311 aa19.83■□□□□ 0.76
UPF1-210ENST00000600689 GOLGA6L10A0A0M3HER8 536 aa19.83■□□□□ 0.76
UPF1-210ENST00000600689 TCP11X1B4DZS4 312 aa19.83■□□□□ 0.76
UPF1-210ENST00000600689 STAT1P42224 750 aa19.83■□□□□ 0.76
UPF1-210ENST00000600689 ALDH5A1P51649 535 aaPredicted RBP19.83■□□□□ 0.76
UPF1-210ENST00000600689 PRR16Q569H4 304 aa19.83■□□□□ 0.76
UPF1-210ENST00000600689 KRT35Q92764 455 aa19.83■□□□□ 0.76
UPF1-210ENST00000600689 TBK1Q9UHD2 729 aa19.83■□□□□ 0.76
UPF1-210ENST00000600689 ATMINO43313 823 aaPredicted RBP19.82■□□□□ 0.76
UPF1-210ENST00000600689 KIAA1755Q5JYT7 1200 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 NUGGCQ68CJ6 796 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 TRMT1LQ7Z2T5 733 aaKnown RBP19.82■□□□□ 0.76
UPF1-210ENST00000600689 ADGRF4Q8IZF3 695 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 PABPC3Q9H361 631 aaKnown RBP19.82■□□□□ 0.76
UPF1-210ENST00000600689 CTNNAL1Q9UBT7 734 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 BRWD3Q6RI45 1802 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 PPFIA2O75334 1257 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 PAEPP09466 180 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 VPS41P49754 854 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 LRCH2Q5VUJ6 765 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 SYCE1Q8N0S2 351 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 FAM163AQ96GL9 167 aaPredicted RBP19.82■□□□□ 0.76
UPF1-210ENST00000600689 PSTPIP2Q9H939 334 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 ZNF287Q9HBT7 754 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 KCNQ5Q9NR82 932 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 STXBP5LQ9Y2K9 1186 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 CCDC169A6NNP5 214 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 ANKRD63C9JTQ0 380 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 AKR1B1P15121 316 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 RPL21P46778 160 aaKnown RBP19.82■□□□□ 0.76
UPF1-210ENST00000600689 CYP2J2P51589 502 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 DRAP1Q14919 205 aaPredicted RBP19.82■□□□□ 0.76
UPF1-210ENST00000600689 TRIP13Q15645 432 aaPredicted RBP19.82■□□□□ 0.76
UPF1-210ENST00000600689 KNOP1Q1ED39 458 aaKnown RBP19.82■□□□□ 0.76
UPF1-210ENST00000600689 ZC2HC1CQ53FD0 456 aaPredicted RBP19.82■□□□□ 0.76
UPF1-210ENST00000600689 ARMC9Q7Z3E5 817 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.82■□□□□ 0.762e-7■■■■■ 64.2
UPF1-210ENST00000600689 KLHL29Q96CT2 875 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 PAIP2Q9BPZ3 127 aaKnown RBP19.82■□□□□ 0.76
UPF1-210ENST00000600689 LBHD1Q9BQE6 289 aaPredicted RBP19.82■□□□□ 0.76
UPF1-210ENST00000600689 CTTNBP2NLQ9P2B4 639 aa19.82■□□□□ 0.76
UPF1-210ENST00000600689 TCRBV7S2A1N4TA0A589 114 aa19.81■□□□□ 0.76
UPF1-210ENST00000600689 KLRG2A4D1S0 409 aaPredicted RBP19.81■□□□□ 0.76
UPF1-210ENST00000600689 NR3C1P04150 777 aa19.81■□□□□ 0.76
UPF1-210ENST00000600689 ZBTB48P10074 688 aaPredicted RBP19.81■□□□□ 0.76
UPF1-210ENST00000600689 CCNHP51946 323 aaPredicted RBP19.81■□□□□ 0.76
UPF1-210ENST00000600689 COG2Q14746 738 aa19.81■□□□□ 0.76
UPF1-210ENST00000600689 TRIM68Q6AZZ1 485 aa19.81■□□□□ 0.76
UPF1-210ENST00000600689 SLC17A8Q8NDX2 589 aa19.81■□□□□ 0.76
UPF1-210ENST00000600689 TBC1D22AQ8WUA7 517 aa19.81■□□□□ 0.76
UPF1-210ENST00000600689 HES6Q96HZ4 224 aa19.81■□□□□ 0.76
UPF1-210ENST00000600689 DDX23Q9BUQ8 820 aaKnown RBP19.81■□□□□ 0.76
UPF1-210ENST00000600689 DHX36Q9H2U1 1008 aaKnown RBP19.81■□□□□ 0.76
UPF1-210ENST00000600689 ENO4A6NNW6 628 aa19.81■□□□□ 0.76
UPF1-210ENST00000600689 HOXD13P35453 343 aa19.81■□□□□ 0.76
UPF1-210ENST00000600689 MESDQ14696 234 aa19.81■□□□□ 0.76
UPF1-210ENST00000600689 EPHA7Q15375 998 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms