RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 EPSTI1Q96J88 318 aa14.15□□□□□ -0.14
UPF1-208ENST00000600012 POP1Q99575 1024 aaKnown RBP14.15□□□□□ -0.14
UPF1-208ENST00000600012 CELF4Q9BZC1 486 aaKnown RBP14.15□□□□□ -0.14
UPF1-208ENST00000600012 FAM13BQ9NYF5 915 aa14.15□□□□□ -0.14
UPF1-208ENST00000600012 HPSEQ9Y251 543 aa14.15□□□□□ -0.14
UPF1-208ENST00000600012 MRPL42Q9Y6G3 142 aaKnown RBP14.15□□□□□ -0.14
UPF1-208ENST00000600012 KDM3AQ9Y4C1 1321 aa14.15□□□□□ -0.15
UPF1-208ENST00000600012 MYH9P35579 1960 aaKnown RBP14.14□□□□□ -0.15
UPF1-208ENST00000600012 FAM237AA0A1B0GTK4 181 aa14.14□□□□□ -0.15
UPF1-208ENST00000600012 SMIM35A0A1B0GVV1 85 aa14.14□□□□□ -0.15
UPF1-208ENST00000600012 POTEMA6NI47 508 aa14.14□□□□□ -0.15
UPF1-208ENST00000600012 ARP10275 920 aa14.14□□□□□ -0.15
UPF1-208ENST00000600012 CDC25AP30304 524 aa14.14□□□□□ -0.15
UPF1-208ENST00000600012 SYKP43405 635 aa14.14□□□□□ -0.15
UPF1-208ENST00000600012 TMEM62Q0P6H9 643 aa14.14□□□□□ -0.15
UPF1-208ENST00000600012 SMAD4Q13485 552 aaKnown RBP14.14□□□□□ -0.15
UPF1-208ENST00000600012 SNW1Q13573 536 aaKnown RBP14.14□□□□□ -0.15
UPF1-208ENST00000600012 SMAD2Q15796 467 aaKnown RBP14.14□□□□□ -0.15
UPF1-208ENST00000600012 TMEM266Q2M3C6 531 aa14.14□□□□□ -0.15
UPF1-208ENST00000600012 CCDC183Q5T5S1 534 aa14.14□□□□□ -0.15
UPF1-208ENST00000600012 RTN4RL1Q86UN2 441 aaPredicted RBP14.14□□□□□ -0.15
UPF1-208ENST00000600012 CRIPAKQ8N1N5 446 aa14.14□□□□□ -0.15
UPF1-208ENST00000600012 NME8Q8N427 588 aa14.14□□□□□ -0.15
UPF1-208ENST00000600012 TRAPPC12Q8WVT3 735 aa14.14□□□□□ -0.15
UPF1-208ENST00000600012 TTC12Q9H892 705 aaPredicted RBP14.14□□□□□ -0.15
UPF1-208ENST00000600012 ALG13Q9NP73 1137 aaKnown RBP14.14□□□□□ -0.15
UPF1-208ENST00000600012 PADI3Q9ULW8 664 aa14.14□□□□□ -0.15
UPF1-208ENST00000600012 PLAGL2Q9UPG8 496 aa14.14□□□□□ -0.15
UPF1-208ENST00000600012 FNDC1Q4ZHG4 1894 aaPredicted RBP14.13□□□□□ -0.15
UPF1-208ENST00000600012 PLXNA4Q9HCM2 1894 aa14.13□□□□□ -0.15
UPF1-208ENST00000600012 A0A087X0B3 334 aa14.13□□□□□ -0.15
UPF1-208ENST00000600012 MEIS1O00470 390 aa14.13□□□□□ -0.15
UPF1-208ENST00000600012 TBX3O15119 743 aa14.13□□□□□ -0.15
UPF1-208ENST00000600012 MBTPS2O43462 519 aa14.13□□□□□ -0.15
UPF1-208ENST00000600012 KINO60870 393 aaKnown RBP14.13□□□□□ -0.15
UPF1-208ENST00000600012 TBX10O75333 385 aa14.13□□□□□ -0.15
UPF1-208ENST00000600012 ATG7O95352 703 aa14.13□□□□□ -0.15
UPF1-208ENST00000600012 FXR2P51116 673 aaKnown RBP eCLIP14.13□□□□□ -0.157e-8■■■■□ 20.8
UPF1-208ENST00000600012 SETQ01105 290 aaPredicted RBP14.13□□□□□ -0.15
UPF1-208ENST00000600012 KRT76Q01546 638 aa14.13□□□□□ -0.15
UPF1-208ENST00000600012 DLX2Q07687 328 aaPredicted RBP14.13□□□□□ -0.15
UPF1-208ENST00000600012 ITGB3BPQ13352 177 aaPredicted RBP14.13□□□□□ -0.15
UPF1-208ENST00000600012 CAMK1Q14012 370 aa14.13□□□□□ -0.15
UPF1-208ENST00000600012 CLUL1Q15846 466 aa14.13□□□□□ -0.15
UPF1-208ENST00000600012 SLFN12Q8IYM2 578 aa14.13□□□□□ -0.15
UPF1-208ENST00000600012 PDILTQ8N807 584 aa14.13□□□□□ -0.15
UPF1-208ENST00000600012 SYAP1Q96A49 352 aaPredicted RBP14.13□□□□□ -0.15
UPF1-208ENST00000600012 NUP62CLQ9H1M0 184 aa14.13□□□□□ -0.15
UPF1-208ENST00000600012 CLSTN2Q9H4D0 955 aa14.13□□□□□ -0.15
UPF1-208ENST00000600012 IGFLR1Q9H665 355 aa14.13□□□□□ -0.15
UPF1-208ENST00000600012 AGO4Q9HCK5 861 aaKnown RBP14.13□□□□□ -0.15
UPF1-208ENST00000600012 DDX19AQ9NUU7 478 aaKnown RBP14.13□□□□□ -0.15
UPF1-208ENST00000600012 KCNH3Q9ULD8 1083 aa14.13□□□□□ -0.15
UPF1-208ENST00000600012 ZNF318Q5VUA4 2279 aa14.12□□□□□ -0.15
UPF1-208ENST00000600012 HBP1O60381 514 aa14.12□□□□□ -0.15
UPF1-208ENST00000600012 ZNF202O95125 648 aa14.12□□□□□ -0.15
UPF1-208ENST00000600012 CSPG5O95196 566 aa14.12□□□□□ -0.15
UPF1-208ENST00000600012 ITGB1P05556 798 aa14.12□□□□□ -0.15
UPF1-208ENST00000600012 GTF2F1P35269 517 aaKnown RBP eCLIP14.12□□□□□ -0.15
UPF1-208ENST00000600012 IRS1P35568 1242 aa14.12□□□□□ -0.15
UPF1-208ENST00000600012 CAMK4Q16566 473 aa14.12□□□□□ -0.15
UPF1-208ENST00000600012 PAN2Q504Q3 1202 aaKnown RBP14.12□□□□□ -0.15
UPF1-208ENST00000600012 FAM160B1Q5W0V3 765 aa14.12□□□□□ -0.15
UPF1-208ENST00000600012 MTHFD1LQ6UB35 978 aa14.12□□□□□ -0.15
UPF1-208ENST00000600012 NIPA1Q7RTP0 329 aa14.12□□□□□ -0.15
UPF1-208ENST00000600012 IGSF22Q8N9C0 903 aa14.12□□□□□ -0.15
UPF1-208ENST00000600012 SPPL3Q8TCT6 385 aa14.12□□□□□ -0.15
UPF1-208ENST00000600012 AK8Q96MA6 479 aa14.12□□□□□ -0.15
UPF1-208ENST00000600012 PANK2Q9BZ23 570 aa14.12□□□□□ -0.15
UPF1-208ENST00000600012 RNF216Q9NWF9 866 aaPredicted RBP14.12□□□□□ -0.15
UPF1-208ENST00000600012 LRWD1Q9UFC0 647 aa14.12□□□□□ -0.15
UPF1-208ENST00000600012 CD207Q9UJ71 328 aa14.12□□□□□ -0.15
UPF1-208ENST00000600012 LRFN2Q9ULH4 789 aa14.12□□□□□ -0.15
UPF1-208ENST00000600012 PCDHA12Q9UN75 941 aa14.12□□□□□ -0.15
UPF1-208ENST00000600012 COL1A2P08123 1366 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 IGKV6D-21A0A0A0MT36 114 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.11□□□□□ -0.15
UPF1-208ENST00000600012 BACH1O14867 736 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 POLR2DO15514 142 aaKnown RBP14.11□□□□□ -0.15
UPF1-208ENST00000600012 LINC01565O15544 149 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 DNAJB1P25685 340 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 KLRC1P26715 233 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 TXLNAP40222 546 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 SARSP49591 514 aaKnown RBP14.11□□□□□ -0.15
UPF1-208ENST00000600012 NDUFV1P49821 464 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 NFX1Q12986 1120 aaKnown RBP14.11□□□□□ -0.15
UPF1-208ENST00000600012 ADAM15Q13444 863 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 KARSQ15046 597 aaKnown RBP14.11□□□□□ -0.15
UPF1-208ENST00000600012 ZSCAN23Q3MJ62 389 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 ODR4Q5SWX8 454 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 LRCH2Q5VUJ6 765 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 NCAPH2Q6IBW4 605 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 CABP7Q86V35 215 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 KLHL23Q8NBE8 558 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 ATP8B4Q8TF62 1192 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 SLC5A5Q92911 643 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 DHX58Q96C10 678 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 FAM20AQ96MK3 541 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 ZNF577Q9BSK1 485 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 SERTAD1Q9UHV2 236 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms