RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 C1orf186Q6ZWK4 172 aa21.68■■□□□ 1.06
SHKBP1-221ENST00000599833 Q7L0L9 218 aa21.68■■□□□ 1.06
SHKBP1-221ENST00000599833 NLRP4Q96MN2 994 aa21.68■■□□□ 1.06
SHKBP1-221ENST00000599833 PLIN2Q99541 437 aa21.68■■□□□ 1.06
SHKBP1-221ENST00000599833 RUSC1Q9BVN2 902 aa21.68■■□□□ 1.06
SHKBP1-221ENST00000599833 FTHL17Q9BXU8 183 aa21.68■■□□□ 1.06
SHKBP1-221ENST00000599833 POLR3FQ9H1D9 316 aaPredicted RBP21.68■■□□□ 1.06
SHKBP1-221ENST00000599833 RGS18Q9NS28 235 aa21.68■■□□□ 1.06
SHKBP1-221ENST00000599833 DNM3Q9UQ16 869 aa21.68■■□□□ 1.06
SHKBP1-221ENST00000599833 ARHGEF35A5YM69 484 aa21.67■■□□□ 1.06
SHKBP1-221ENST00000599833 GPR182O15218 404 aa21.67■■□□□ 1.06
SHKBP1-221ENST00000599833 ASAP2O43150 1006 aa21.67■■□□□ 1.06
SHKBP1-221ENST00000599833 PPP6R2O75170 966 aa21.67■■□□□ 1.06
SHKBP1-221ENST00000599833 POU5F1BQ06416 359 aa21.67■■□□□ 1.06
SHKBP1-221ENST00000599833 NFX1Q12986 1120 aaKnown RBP21.67■■□□□ 1.06
SHKBP1-221ENST00000599833 KARSQ15046 597 aaKnown RBP21.67■■□□□ 1.06
SHKBP1-221ENST00000599833 FOXD4L6Q3SYB3 417 aaPredicted RBP21.67■■□□□ 1.06
SHKBP1-221ENST00000599833 AXDND1Q5T1B0 1012 aaPredicted RBP21.67■■□□□ 1.06
SHKBP1-221ENST00000599833 RINT1Q6NUQ1 792 aa21.67■■□□□ 1.06
SHKBP1-221ENST00000599833 FOXD4L3Q6VB84 417 aaPredicted RBP21.67■■□□□ 1.06
SHKBP1-221ENST00000599833 SPRED2Q7Z698 418 aa21.67■■□□□ 1.06
SHKBP1-221ENST00000599833 SYT2Q8N9I0 419 aaPredicted RBP21.67■■□□□ 1.06
SHKBP1-221ENST00000599833 ZNF396Q96N95 335 aaPredicted RBP21.67■■□□□ 1.06
SHKBP1-221ENST00000599833 GCOM2Q9BZD3 368 aaPredicted RBP21.67■■□□□ 1.06
SHKBP1-221ENST00000599833 POLD4Q9HCU8 107 aa21.67■■□□□ 1.06
SHKBP1-221ENST00000599833 FNDC1Q4ZHG4 1894 aaPredicted RBP21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 A0A087X0B3 334 aa21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 C9IYK1 514 aa21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 SPTLC2O15270 562 aa21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 AMHP03971 560 aa21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 SRGAP2CP0DJJ0 459 aa21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 PLCG1P19174 1290 aa21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 PTENP60484 403 aa21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 FAM189BP81408 668 aa21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 MXD4Q14582 209 aaPredicted RBP21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 AMHR2Q16671 573 aa21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 NAALADL2Q58DX5 795 aa21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 ARSHQ5FYA8 562 aa21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 FAM43BQ6ZT52 329 aaPredicted RBP21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 MYOCDQ8IZQ8 938 aa21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 KRI1Q8N9T8 703 aaKnown RBP21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 RNF149Q8NC42 400 aa21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 MCPH1Q8NEM0 835 aa21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 SP7Q8TDD2 431 aaPredicted RBP21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 SYMPKQ92797 1274 aaKnown RBP21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 TIFAQ96CG3 184 aa21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 NFKBIZQ9BYH8 718 aa21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 NT5C3AQ9H0P0 336 aa21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 NKX2-4Q9H2Z4 354 aa21.66■■□□□ 1.06
SHKBP1-221ENST00000599833 MYH11P35749 1972 aa21.65■■□□□ 1.06
SHKBP1-221ENST00000599833 ADGRA3Q8IWK6 1321 aa21.65■■□□□ 1.06
SHKBP1-221ENST00000599833 TMEM265A0A087WTH1 108 aa21.65■■□□□ 1.06
SHKBP1-221ENST00000599833 LINC00271P0C7V0 271 aa21.65■■□□□ 1.06
SHKBP1-221ENST00000599833 HOXA11P31270 313 aaPredicted RBP21.65■■□□□ 1.06
SHKBP1-221ENST00000599833 RAB30Q15771 203 aa21.65■■□□□ 1.06
SHKBP1-221ENST00000599833 CDCA2Q69YH5 1023 aaPredicted RBP21.65■■□□□ 1.06
SHKBP1-221ENST00000599833 MAEAQ7L5Y9 396 aa21.65■■□□□ 1.06
SHKBP1-221ENST00000599833 SRGAP1Q7Z6B7 1085 aa21.65■■□□□ 1.06
SHKBP1-221ENST00000599833 ZNF689Q96CS4 500 aaPredicted RBP21.65■■□□□ 1.06
SHKBP1-221ENST00000599833 ADAM2Q99965 735 aa21.65■■□□□ 1.06
SHKBP1-221ENST00000599833 KIAA1671Q9BY89 1806 aa21.64■■□□□ 1.06
SHKBP1-221ENST00000599833 CA3P07451 260 aa21.64■■□□□ 1.05
SHKBP1-221ENST00000599833 UBA7P41226 1012 aa21.64■■□□□ 1.05
SHKBP1-221ENST00000599833 MBTD1Q05BQ5 628 aa21.64■■□□□ 1.05
SHKBP1-221ENST00000599833 STK38Q15208 465 aa21.64■■□□□ 1.05
SHKBP1-221ENST00000599833 ZRSR1Q15695 479 aaKnown RBP21.64■■□□□ 1.05
SHKBP1-221ENST00000599833 ATL3Q6DD88 541 aa21.64■■□□□ 1.05
SHKBP1-221ENST00000599833 CCDC43Q96MW1 224 aaKnown RBP21.64■■□□□ 1.05
SHKBP1-221ENST00000599833 RAD9AQ99638 391 aa21.64■■□□□ 1.05
SHKBP1-221ENST00000599833 SEMA6BQ9H3T3 888 aa21.64■■□□□ 1.05
SHKBP1-221ENST00000599833 DAXXQ9UER7 740 aaPredicted RBP21.64■■□□□ 1.05
SHKBP1-221ENST00000599833 RCOR1Q9UKL0 485 aa21.64■■□□□ 1.05
SHKBP1-221ENST00000599833 MYO9BQ13459 2157 aa21.64■■□□□ 1.05
SHKBP1-221ENST00000599833 NLRC5Q86WI3 1866 aa21.63■■□□□ 1.05
SHKBP1-221ENST00000599833 PLA2G4BP0C869 781 aa21.63■■□□□ 1.05
SHKBP1-221ENST00000599833 ATF7P17544 494 aaPredicted RBP21.63■■□□□ 1.05
SHKBP1-221ENST00000599833 GUCY2CP25092 1073 aa21.63■■□□□ 1.05
SHKBP1-221ENST00000599833 SARSP49591 514 aaKnown RBP21.63■■□□□ 1.05
SHKBP1-221ENST00000599833 FAM102BQ5T8I3 360 aa21.63■■□□□ 1.05
SHKBP1-221ENST00000599833 FAM117BQ6P1L5 589 aa21.63■■□□□ 1.05
SHKBP1-221ENST00000599833 SHC4Q6S5L8 630 aa21.63■■□□□ 1.05
SHKBP1-221ENST00000599833 RAD54LQ92698 747 aa21.63■■□□□ 1.05
SHKBP1-221ENST00000599833 GUCD1Q96NT3 240 aa21.63■■□□□ 1.05
SHKBP1-221ENST00000599833 TRAIPQ9BWF2 469 aa21.63■■□□□ 1.05
SHKBP1-221ENST00000599833 AGPAT5Q9NUQ2 364 aa21.63■■□□□ 1.05
SHKBP1-221ENST00000599833 RNF19AQ9NV58 838 aa21.63■■□□□ 1.05
SHKBP1-221ENST00000599833 TLL1O43897 1013 aa21.62■■□□□ 1.05
SHKBP1-221ENST00000599833 EDN1P05305 212 aa21.62■■□□□ 1.05
SHKBP1-221ENST00000599833 TAP1Q03518 808 aa21.62■■□□□ 1.05
SHKBP1-221ENST00000599833 ODR4Q5SWX8 454 aa21.62■■□□□ 1.05
SHKBP1-221ENST00000599833 SLC24A5Q71RS6 500 aa21.62■■□□□ 1.05
SHKBP1-221ENST00000599833 ZNF598Q86UK7 904 aaKnown RBP21.62■■□□□ 1.05
SHKBP1-221ENST00000599833 SCLT1Q96NL6 688 aa21.62■■□□□ 1.05
SHKBP1-221ENST00000599833 INO80BQ9C086 356 aaPredicted RBP21.62■■□□□ 1.05
SHKBP1-221ENST00000599833 CCDC113Q9H0I3 377 aa21.62■■□□□ 1.05
SHKBP1-221ENST00000599833 MTMR10Q9NXD2 777 aa21.62■■□□□ 1.05
SHKBP1-221ENST00000599833 MSRAQ9UJ68 235 aa21.62■■□□□ 1.05
SHKBP1-221ENST00000599833 RALGAPA2Q2PPJ7 1873 aa21.61■■□□□ 1.05
SHKBP1-221ENST00000599833 TSPAN1O60635 241 aa21.61■■□□□ 1.05
SHKBP1-221ENST00000599833 HIP1RO75146 1068 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms