RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 H3BNC9 293 aa15.75■□□□□ 0.11
LIG1-218ENST00000599322 SRGAP2CP0DJJ0 459 aa15.75■□□□□ 0.11
LIG1-218ENST00000599322 MUTP22033 750 aa15.75■□□□□ 0.11
LIG1-218ENST00000599322 PHKA2P46019 1235 aa15.75■□□□□ 0.11
LIG1-218ENST00000599322 KCNQ1P51787 676 aa15.75■□□□□ 0.11
LIG1-218ENST00000599322 PAN2Q504Q3 1202 aaKnown RBP15.75■□□□□ 0.11
LIG1-218ENST00000599322 NAALADL2Q58DX5 795 aa15.75■□□□□ 0.11
LIG1-218ENST00000599322 TWF2Q6IBS0 349 aaKnown RBP15.75■□□□□ 0.11
LIG1-218ENST00000599322 SRGAP1Q7Z6B7 1085 aa15.75■□□□□ 0.11
LIG1-218ENST00000599322 RNF169Q8NCN4 708 aa15.75■□□□□ 0.11
LIG1-218ENST00000599322 PRPF31Q8WWY3 499 aaKnown RBP15.75■□□□□ 0.11
LIG1-218ENST00000599322 LINC01599Q8WXQ3 324 aa15.75■□□□□ 0.11
LIG1-218ENST00000599322 TMEM143Q96AN5 459 aa15.75■□□□□ 0.11
LIG1-218ENST00000599322 ZNF689Q96CS4 500 aaPredicted RBP15.75■□□□□ 0.11
LIG1-218ENST00000599322 POLR3CQ9BUI4 534 aaPredicted RBP15.75■□□□□ 0.11
LIG1-218ENST00000599322 LMAN2LQ9H0V9 348 aa15.75■□□□□ 0.11
LIG1-218ENST00000599322 LRWD1Q9UFC0 647 aa15.75■□□□□ 0.11
LIG1-218ENST00000599322 COG5Q9UP83 839 aa15.75■□□□□ 0.11
LIG1-218ENST00000599322 PCDHB12Q9Y5F1 795 aa15.75■□□□□ 0.11
LIG1-218ENST00000599322 GTF3C3Q9Y5Q9 886 aa15.75■□□□□ 0.11
LIG1-218ENST00000599322 BRWD1Q9NSI6 2320 aa15.75■□□□□ 0.11
LIG1-218ENST00000599322 ATG2AQ2TAZ0 1938 aa15.74■□□□□ 0.11
LIG1-218ENST00000599322 TBKBP1A7MCY6 615 aa15.74■□□□□ 0.11
LIG1-218ENST00000599322 C9IYK1 514 aa15.74■□□□□ 0.11
LIG1-218ENST00000599322 LPXNO60711 386 aa15.74■□□□□ 0.11
LIG1-218ENST00000599322 EOMESO95936 686 aa15.74■□□□□ 0.11
LIG1-218ENST00000599322 CCT6AP40227 531 aaKnown RBP15.74■□□□□ 0.11
LIG1-218ENST00000599322 DRP2Q13474 957 aa15.74■□□□□ 0.11
LIG1-218ENST00000599322 PDIA5Q14554 519 aa15.74■□□□□ 0.11
LIG1-218ENST00000599322 CSPP1Q1MSJ5 1256 aa15.74■□□□□ 0.11
LIG1-218ENST00000599322 TIGD5Q53EQ6 642 aa15.74■□□□□ 0.11
LIG1-218ENST00000599322 DTHD1Q6ZMT9 781 aa15.74■□□□□ 0.11
LIG1-218ENST00000599322 RSPH1Q8WYR4 309 aa15.74■□□□□ 0.11
LIG1-218ENST00000599322 PPP2R3CQ969Q6 453 aa15.74■□□□□ 0.11
LIG1-218ENST00000599322 MRPL38Q96DV4 380 aaKnown RBP15.74■□□□□ 0.11
LIG1-218ENST00000599322 CEP89Q96ST8 783 aa15.74■□□□□ 0.11
LIG1-218ENST00000599322 BMP2KQ9NSY1 1161 aaPredicted RBP15.74■□□□□ 0.11
LIG1-218ENST00000599322 WRAP73Q9P2S5 460 aaPredicted RBP15.74■□□□□ 0.11
LIG1-218ENST00000599322 PIN4Q9Y237 131 aaKnown RBP15.74■□□□□ 0.11
LIG1-218ENST00000599322 ARHGEF35A5YM69 484 aa15.73■□□□□ 0.11
LIG1-218ENST00000599322 WNT7AO00755 349 aa15.73■□□□□ 0.11
LIG1-218ENST00000599322 MGEA5O60502 916 aa15.73■□□□□ 0.11
LIG1-218ENST00000599322 ERLIN2O94905 339 aa15.73■□□□□ 0.11
LIG1-218ENST00000599322 COL9A1P20849 921 aa15.73■□□□□ 0.11
LIG1-218ENST00000599322 RPA1P27694 616 aa15.73■□□□□ 0.11
LIG1-218ENST00000599322 FXR2P51116 673 aaKnown RBP eCLIP15.73■□□□□ 0.11
LIG1-218ENST00000599322 RAB27AP51159 221 aa15.73■□□□□ 0.11
LIG1-218ENST00000599322 FAM189BP81408 668 aa15.73■□□□□ 0.11
LIG1-218ENST00000599322 LAMTOR4Q0VGL1 99 aa15.73■□□□□ 0.11
LIG1-218ENST00000599322 PTGDRQ13258 359 aa15.73■□□□□ 0.11
LIG1-218ENST00000599322 DSC3Q14574 896 aa15.73■□□□□ 0.11
LIG1-218ENST00000599322 PCBP1Q15365 356 aaKnown RBP eCLIP15.73■□□□□ 0.11
LIG1-218ENST00000599322 KRT79Q5XKE5 535 aa15.73■□□□□ 0.11
LIG1-218ENST00000599322 FERMT3Q86UX7 667 aa15.73■□□□□ 0.11
LIG1-218ENST00000599322 RNF149Q8NC42 400 aa15.73■□□□□ 0.11
LIG1-218ENST00000599322 MCPH1Q8NEM0 835 aa15.73■□□□□ 0.11
LIG1-218ENST00000599322 PIGOQ8TEQ8 1089 aa15.73■□□□□ 0.11
LIG1-218ENST00000599322 CLP1Q92989 425 aaKnown RBP15.73■□□□□ 0.11
LIG1-218ENST00000599322 PGBD4Q96DM1 585 aa15.73■□□□□ 0.11
LIG1-218ENST00000599322 TMEM117Q9H0C3 514 aa15.73■□□□□ 0.11
LIG1-218ENST00000599322 DBR1Q9UK59 544 aaKnown RBP15.73■□□□□ 0.11
LIG1-218ENST00000599322 TTC3P53804 2025 aa15.72■□□□□ 0.11
LIG1-218ENST00000599322 CARNS1A5YM72 827 aa15.72■□□□□ 0.11
LIG1-218ENST00000599322 C5orf67F2Z3F1 127 aa15.72■□□□□ 0.11
LIG1-218ENST00000599322 CD2BP2O95400 341 aaKnown RBP15.72■□□□□ 0.11
LIG1-218ENST00000599322 FGFR4P22455 802 aa15.72■□□□□ 0.11
LIG1-218ENST00000599322 PRPHP41219 470 aa15.72■□□□□ 0.11
LIG1-218ENST00000599322 RARRES1P49788 294 aa15.72■□□□□ 0.11
LIG1-218ENST00000599322 CATSPER3Q86XQ3 398 aa15.72■□□□□ 0.11
LIG1-218ENST00000599322 ECHDC2Q86YB7 292 aa15.72■□□□□ 0.11
LIG1-218ENST00000599322 KSR1Q8IVT5 923 aa15.72■□□□□ 0.11
LIG1-218ENST00000599322 ZNF579Q8NAF0 562 aaKnown RBP15.72■□□□□ 0.11
LIG1-218ENST00000599322 P2RX5Q93086 422 aa15.72■□□□□ 0.11
LIG1-218ENST00000599322 HLA-CQ95604 372 aa15.72■□□□□ 0.11
LIG1-218ENST00000599322 MRPL9Q9BYD2 267 aaKnown RBP15.72■□□□□ 0.11
LIG1-218ENST00000599322 RAPGEFL1Q9UHV5 662 aa15.72■□□□□ 0.11
LIG1-218ENST00000599322 WDR81Q562E7 1941 aa15.72■□□□□ 0.11
LIG1-218ENST00000599322 RALGAPA2Q2PPJ7 1873 aa15.71■□□□□ 0.11
LIG1-218ENST00000599322 COL4A6Q14031 1691 aa15.71■□□□□ 0.11
LIG1-218ENST00000599322 LOXHD1Q8IVV2 1947 aa15.71■□□□□ 0.11
LIG1-218ENST00000599322 A0A0U1RQF3 1178 aa15.71■□□□□ 0.11
LIG1-218ENST00000599322 ZBTB39O15060 712 aa15.71■□□□□ 0.11
LIG1-218ENST00000599322 NCK2O43639 380 aa15.71■□□□□ 0.11
LIG1-218ENST00000599322 USO1O60763 962 aaKnown RBP15.71■□□□□ 0.11
LIG1-218ENST00000599322 CSDE1O75534 798 aaKnown RBP15.71■□□□□ 0.11
LIG1-218ENST00000599322 BMP15O95972 392 aa15.71■□□□□ 0.11
LIG1-218ENST00000599322 BRAPQ7Z569 592 aa15.71■□□□□ 0.11
LIG1-218ENST00000599322 HACE1Q8IYU2 909 aa15.71■□□□□ 0.11
LIG1-218ENST00000599322 SNX29Q8TEQ0 813 aa15.71■□□□□ 0.11
LIG1-218ENST00000599322 PUF60Q9UHX1 559 aaKnown RBP15.71■□□□□ 0.11
LIG1-218ENST00000599322 PCDHB6Q9Y5E3 794 aa15.71■□□□□ 0.11
LIG1-218ENST00000599322 MRPL42Q9Y6G3 142 aaKnown RBP15.71■□□□□ 0.11
LIG1-218ENST00000599322 VPS37CA5D8V6 355 aaPredicted RBP15.7■□□□□ 0.1
LIG1-218ENST00000599322 INO80B-WBP1J3KQ70 363 aa15.7■□□□□ 0.1
LIG1-218ENST00000599322 MED24O75448 989 aa15.7■□□□□ 0.1
LIG1-218ENST00000599322 LAG3P18627 525 aa15.7■□□□□ 0.1
LIG1-218ENST00000599322 AXLP30530 894 aa15.7■□□□□ 0.1
LIG1-218ENST00000599322 POU5F1BQ06416 359 aa15.7■□□□□ 0.1
LIG1-218ENST00000599322 NBR1Q14596 966 aa15.7■□□□□ 0.1
LIG1-218ENST00000599322 BMS1Q14692 1282 aaKnown RBP15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms