RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 TPH2Q8IWU9 490 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 SMAP1Q8IYB5 467 aaPredicted RBP10.54□□□□□ -0.72
TRIM28-208ENST00000597172 RDM1Q8NG50 284 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 ERMNQ8TAM6 284 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 SEPT1Q8WYJ6 367 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 EMID1Q96A84 441 aaPredicted RBP10.54□□□□□ -0.72
TRIM28-208ENST00000597172 PCYT2Q99447 389 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 GPR20Q99678 358 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 BLOC1S4Q9NUP1 217 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 TMEM63CQ9P1W3 806 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 CCDC39Q9UFE4 941 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 PCDHA10Q9Y5I2 948 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 STK24Q9Y6E0 443 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 SIP14410 1827 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 E9PMD0 336 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 ZBTB39O15060 712 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 NKRFO15226 690 aaKnown RBP eCLIP10.53□□□□□ -0.72
TRIM28-208ENST00000597172 DYNC1LI2O43237 492 aaPredicted RBP10.53□□□□□ -0.72
TRIM28-208ENST00000597172 STBD1O95210 358 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 SLFN14P0C7P3 912 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 ATP4AP20648 1035 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 TXLNAP40222 546 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 SMAD4Q13485 552 aaKnown RBP10.53□□□□□ -0.72
TRIM28-208ENST00000597172 UGCGQ16739 394 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 SWSAP1Q6NVH7 229 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 POTEGQ6S5H5 508 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 KRBA2Q6ZNG9 492 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 IQUBQ8NA54 791 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 RETREG2Q8NC44 543 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 DHX58Q96C10 678 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 CALML4Q96GE6 196 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 TIGD1Q96MW7 591 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 SPATA33Q96N06 139 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 MTRQ99707 1265 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 NSUN3Q9H649 340 aaKnown RBP10.53□□□□□ -0.72
TRIM28-208ENST00000597172 TUFT1Q9NNX1 390 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 TRMT13Q9NUP7 481 aaKnown RBP10.53□□□□□ -0.72
TRIM28-208ENST00000597172 DDX19AQ9NUU7 478 aaKnown RBP10.53□□□□□ -0.72
TRIM28-208ENST00000597172 KIAA1024Q9UPX6 916 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 SAMM50Q9Y512 469 aa10.53□□□□□ -0.72
TRIM28-208ENST00000597172 ZNF862O60290 1169 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 ZEB2O60315 1214 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 LGR5O75473 907 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 LYPLA2O95372 231 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 GJB5O95377 273 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 PSAPP07602 524 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 IQCF3P0C7M6 154 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 MUTP22033 750 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 QARSP47897 775 aaKnown RBP10.52□□□□□ -0.73
TRIM28-208ENST00000597172 WDR5P61964 334 aaKnown RBP10.52□□□□□ -0.73
TRIM28-208ENST00000597172 CAMK4Q16566 473 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 HAUS3Q68CZ6 603 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 MIS18BP1Q6P0N0 1132 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 CCDC60Q8IWA6 550 aaPredicted RBP10.52□□□□□ -0.73
TRIM28-208ENST00000597172 ELOA2Q8IYF1 753 aaPredicted RBP10.52□□□□□ -0.73
TRIM28-208ENST00000597172 KIAA2013Q8IYS2 634 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 PPTC7Q8NI37 304 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 AFG1LQ8WV93 481 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 PAGE5Q96GU1 130 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 LXNQ9BS40 222 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 C17orf80Q9BSJ5 609 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 NT5C3AQ9H0P0 336 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 CLSTN2Q9H4D0 955 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 DLL3Q9NYJ7 618 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 GABBR1Q9UBS5 961 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 USP25Q9UHP3 1055 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 Q9Y3F1 56 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 MAFBQ9Y5Q3 323 aaPredicted RBP10.52□□□□□ -0.73
TRIM28-208ENST00000597172 PTPRSQ13332 1948 aa10.52□□□□□ -0.73
TRIM28-208ENST00000597172 CNOT1A5YKK6 2376 aaKnown RBP10.51□□□□□ -0.73
TRIM28-208ENST00000597172 A6NJR5 290 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 LOC730098B7Z3J9 87 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 PDGFBP01127 241 aaPredicted RBP10.51□□□□□ -0.73
TRIM28-208ENST00000597172 HOXD8P13378 290 aaPredicted RBP10.51□□□□□ -0.73
TRIM28-208ENST00000597172 TCF7P36402 384 aaPredicted RBP10.51□□□□□ -0.73
TRIM28-208ENST00000597172 STAT6P42226 847 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 PSMC5P62195 406 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 DEFB103AP81534 67 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 DLX2Q07687 328 aaPredicted RBP10.51□□□□□ -0.73
TRIM28-208ENST00000597172 MCM6Q14566 821 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 FSCN1Q16658 493 aaKnown RBP10.51□□□□□ -0.73
TRIM28-208ENST00000597172 CTC1Q2NKJ3 1217 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 CAVIN1Q6NZI2 390 aaKnown RBP10.51□□□□□ -0.73
TRIM28-208ENST00000597172 C4orf19Q8IY42 314 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 GRAMD1CQ8IYS0 662 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 CNNM3Q8NE01 707 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 OR6J1Q8NGC5 347 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 RASSF8Q8NHQ8 419 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 AFAP1L1Q8TED9 768 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 PIGOQ8TEQ8 1089 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 RAD54LQ92698 747 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 STAMQ92783 540 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 CDK5RAP3Q96JB5 506 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 PYM1Q9BRP8 204 aaKnown RBP10.51□□□□□ -0.73
TRIM28-208ENST00000597172 ZSWIM4Q9H7M6 989 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 ZNF302Q9NR11 478 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 KBTBD4Q9NVX7 518 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 TCEAL9Q9UHQ7 104 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 DNM3Q9UQ16 869 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 KDM3AQ9Y4C1 1321 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms