RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 SIP14410 1827 aa16.15■□□□□ 0.18
VRK3-212ENST00000596814 TRIM49BA6NDI0 452 aa16.15■□□□□ 0.18
VRK3-212ENST00000596814 SLC16A4O15374 487 aa16.15■□□□□ 0.18
VRK3-212ENST00000596814 PPP1R37O75864 691 aa16.15■□□□□ 0.18
VRK3-212ENST00000596814 CCL5P13501 91 aa16.15■□□□□ 0.18
VRK3-212ENST00000596814 TMOD1P28289 359 aa16.15■□□□□ 0.18
VRK3-212ENST00000596814 MTFR1Q15390 333 aa16.15■□□□□ 0.18
VRK3-212ENST00000596814 PKN2Q16513 984 aaKnown RBP16.15■□□□□ 0.18
VRK3-212ENST00000596814 ZC2HC1CQ53FD0 456 aaPredicted RBP16.15■□□□□ 0.18
VRK3-212ENST00000596814 CENPPQ6IPU0 288 aa16.15■□□□□ 0.18
VRK3-212ENST00000596814 NFRKBQ6P4R8 1299 aa16.15■□□□□ 0.18
VRK3-212ENST00000596814 LINC01465Q8N7H1 131 aa16.15■□□□□ 0.18
VRK3-212ENST00000596814 ZNF507Q8TCN5 953 aa16.15■□□□□ 0.18
VRK3-212ENST00000596814 PPP1R13LQ8WUF5 828 aa16.15■□□□□ 0.18
VRK3-212ENST00000596814 KIFC3Q9BVG8 833 aa16.15■□□□□ 0.18
VRK3-212ENST00000596814 SUCLA2Q9P2R7 463 aaPredicted RBP16.15■□□□□ 0.18
VRK3-212ENST00000596814 HDAC6Q9UBN7 1215 aa16.15■□□□□ 0.18
VRK3-212ENST00000596814 NFE2L3Q9Y4A8 694 aa16.15■□□□□ 0.18
VRK3-212ENST00000596814 C17orf102A2RUQ5 167 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 MOXD2PA6NHM9 499 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 LRRIQ4A6NIV6 560 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 H0YCG3 227 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 CABYRO75952 493 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 MYCP01106 439 aaPredicted RBP16.14■□□□□ 0.17
VRK3-212ENST00000596814 GNAT1P11488 350 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 MRE11P49959 708 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 ACLYP53396 1101 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 PMS1P54277 932 aaKnown RBP16.14■□□□□ 0.17
VRK3-212ENST00000596814 TPM4P67936 248 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 CAPSQ13938 189 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 MXD4Q14582 209 aaPredicted RBP16.14■□□□□ 0.17
VRK3-212ENST00000596814 TPD52L1Q16890 204 aaPredicted RBP16.14■□□□□ 0.17
VRK3-212ENST00000596814 UVSSAQ2YD98 709 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 SPATA1Q5VX52 437 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 HAUS6Q7Z4H7 955 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 ARRDC4Q8NCT1 418 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 TMEM161BQ8NDZ6 487 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 PRPF31Q8WWY3 499 aaKnown RBP16.14■□□□□ 0.17
VRK3-212ENST00000596814 HVCN1Q96D96 273 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 TSG101Q99816 390 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 NTPCRQ9BSD7 190 aaKnown RBP16.14■□□□□ 0.17
VRK3-212ENST00000596814 TSEN34Q9BSV6 310 aaKnown RBP16.14■□□□□ 0.17
VRK3-212ENST00000596814 STRA6Q9BX79 667 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 SEMA6BQ9H3T3 888 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 TRIP12Q14669 1992 aaPredicted RBP16.14■□□□□ 0.17
VRK3-212ENST00000596814 ADGRA3Q8IWK6 1321 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 MBLAC1A4D2B0 266 aaPredicted RBP16.14■□□□□ 0.17
VRK3-212ENST00000596814 HOXC8P31273 242 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 ABCD1P33897 745 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 GTF2BQ00403 316 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 LRRC63Q05C16 580 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 LAMTOR4Q0VGL1 99 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 KNOP1Q1ED39 458 aaKnown RBP16.14■□□□□ 0.17
VRK3-212ENST00000596814 NBPF20Q3BBV1 942 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 TTI2Q6NXR4 508 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 RHPN2Q8IUC4 686 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 DEPTORQ8TB45 409 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 MAP7D2Q96T17 732 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 RNF208Q9H0X6 261 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 KCTD10Q9H3F6 313 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 ARHGAP28Q9P2N2 729 aa16.14■□□□□ 0.17
VRK3-212ENST00000596814 ZMYM2Q9UBW7 1377 aa16.13■□□□□ 0.17
VRK3-212ENST00000596814 DENND3A2RUS2 1198 aa16.13■□□□□ 0.17
VRK3-212ENST00000596814 HOXD13P35453 343 aa16.13■□□□□ 0.17
VRK3-212ENST00000596814 ADAM17P78536 824 aa16.13■□□□□ 0.17
VRK3-212ENST00000596814 HIC1Q14526 733 aa16.13■□□□□ 0.17
VRK3-212ENST00000596814 ZCWPW2Q504Y3 356 aa16.13■□□□□ 0.17
VRK3-212ENST00000596814 ANKRD40Q6AI12 368 aa16.13■□□□□ 0.17
VRK3-212ENST00000596814 FOXR2Q6PJQ5 311 aa16.13■□□□□ 0.17
VRK3-212ENST00000596814 KSR1Q8IVT5 923 aa16.13■□□□□ 0.17
VRK3-212ENST00000596814 DEFB118Q96PH6 123 aa16.13■□□□□ 0.17
VRK3-212ENST00000596814 GTF2IRD1Q9UHL9 959 aa16.13■□□□□ 0.17
VRK3-212ENST00000596814 AKT3Q9Y243 479 aa16.13■□□□□ 0.17
VRK3-212ENST00000596814 KBTBD13C9JR72 458 aa16.12■□□□□ 0.17
VRK3-212ENST00000596814 ASAP2O43150 1006 aa16.12■□□□□ 0.17
VRK3-212ENST00000596814 GJB1P08034 283 aa16.12■□□□□ 0.17
VRK3-212ENST00000596814 CYP2C9P11712 490 aa16.12■□□□□ 0.17
VRK3-212ENST00000596814 SCP2P22307 547 aa16.12■□□□□ 0.17
VRK3-212ENST00000596814 KCNA1Q09470 495 aa16.12■□□□□ 0.17
VRK3-212ENST00000596814 TFDP1Q14186 410 aa16.12■□□□□ 0.17
VRK3-212ENST00000596814 FAM47CQ5HY64 1035 aa16.12■□□□□ 0.17
VRK3-212ENST00000596814 PPP4R3CPQ6ZMV5 832 aa16.12■□□□□ 0.17
VRK3-212ENST00000596814 ZNF333Q96JL9 665 aa16.12■□□□□ 0.17
VRK3-212ENST00000596814 NLRP4Q96MN2 994 aa16.12■□□□□ 0.17
VRK3-212ENST00000596814 GLT1D1Q96MS3 346 aa16.12■□□□□ 0.17
VRK3-212ENST00000596814 ACCSQ96QU6 501 aa16.12■□□□□ 0.17
VRK3-212ENST00000596814 TMEM206Q9H813 350 aa16.12■□□□□ 0.17
VRK3-212ENST00000596814 TYW1Q9NV66 732 aaKnown RBP16.12■□□□□ 0.17
VRK3-212ENST00000596814 SMIM35A0A1B0GVV1 85 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 TREHO43280 583 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 SESTD1Q86VW0 696 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 SYCP3Q8IZU3 236 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 CSGALNACT2Q8N6G5 542 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 RNF149Q8NC42 400 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 KCNN1Q92952 543 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 VTI1AQ96AJ9 217 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 DUSP9Q99956 384 aaKnown RBP16.11■□□□□ 0.17
VRK3-212ENST00000596814 HSD3B7Q9H2F3 369 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 FANCLQ9NW38 375 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 TBX20Q9UMR3 447 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms