RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 ATP6V0A4Q9HBG4 840 aa12.41□□□□□ -0.42
VRK3-210ENST00000596121 FBXO2Q9UK22 296 aaPredicted RBP12.41□□□□□ -0.42
VRK3-210ENST00000596121 DGKIO75912 1065 aa12.4□□□□□ -0.42
VRK3-210ENST00000596121 CYP11B2P19099 503 aa12.4□□□□□ -0.42
VRK3-210ENST00000596121 IBSPP21815 317 aaPredicted RBP12.4□□□□□ -0.42
VRK3-210ENST00000596121 HOXA11P31270 313 aaPredicted RBP12.4□□□□□ -0.42
VRK3-210ENST00000596121 CDC42EP1Q00587 391 aa12.4□□□□□ -0.42
VRK3-210ENST00000596121 TMEM119Q4V9L6 283 aa12.4□□□□□ -0.42
VRK3-210ENST00000596121 SPECC1Q5M775 1068 aa12.4□□□□□ -0.42
VRK3-210ENST00000596121 HYIQ5T013 277 aa12.4□□□□□ -0.42
VRK3-210ENST00000596121 FAM102BQ5T8I3 360 aa12.4□□□□□ -0.42
VRK3-210ENST00000596121 HAUS3Q68CZ6 603 aa12.4□□□□□ -0.42
VRK3-210ENST00000596121 EXOC8Q8IYI6 725 aa12.4□□□□□ -0.42
VRK3-210ENST00000596121 RNF149Q8NC42 400 aa12.4□□□□□ -0.42
VRK3-210ENST00000596121 TCP11Q8WWU5 503 aa12.4□□□□□ -0.42
VRK3-210ENST00000596121 CLIC6Q96NY7 704 aa12.4□□□□□ -0.42
VRK3-210ENST00000596121 C17orf80Q9BSJ5 609 aa12.4□□□□□ -0.42
VRK3-210ENST00000596121 RUSC1Q9BVN2 902 aa12.4□□□□□ -0.42
VRK3-210ENST00000596121 RAB34Q9BZG1 259 aa12.4□□□□□ -0.42
VRK3-210ENST00000596121 POLR3FQ9H1D9 316 aaPredicted RBP12.4□□□□□ -0.42
VRK3-210ENST00000596121 RNF19AQ9NV58 838 aa12.4□□□□□ -0.42
VRK3-210ENST00000596121 TFIP11Q9UBB9 837 aaKnown RBP12.4□□□□□ -0.42
VRK3-210ENST00000596121 ZDHHC9Q9Y397 364 aa12.4□□□□□ -0.42
VRK3-210ENST00000596121 INSL6Q9Y581 213 aa12.4□□□□□ -0.42
VRK3-210ENST00000596121 EYSQ5T1H1 3165 aa12.39□□□□□ -0.43
VRK3-210ENST00000596121 DENND3A2RUS2 1198 aa12.39□□□□□ -0.43
VRK3-210ENST00000596121 ARHGEF35A5YM69 484 aa12.39□□□□□ -0.43
VRK3-210ENST00000596121 ASAP2O43150 1006 aa12.39□□□□□ -0.43
VRK3-210ENST00000596121 GAS2O43903 313 aaKnown RBP12.39□□□□□ -0.43
VRK3-210ENST00000596121 LPXNO60711 386 aa12.39□□□□□ -0.43
VRK3-210ENST00000596121 EYA4O95677 639 aa12.39□□□□□ -0.43
VRK3-210ENST00000596121 HSP90AA1P07900 732 aaKnown RBP12.39□□□□□ -0.43
VRK3-210ENST00000596121 ZSCAN22P10073 491 aaPredicted RBP12.39□□□□□ -0.43
VRK3-210ENST00000596121 ATF7P17544 494 aaPredicted RBP12.39□□□□□ -0.43
VRK3-210ENST00000596121 SARSP49591 514 aaKnown RBP12.39□□□□□ -0.43
VRK3-210ENST00000596121 PTENP60484 403 aa12.39□□□□□ -0.43
VRK3-210ENST00000596121 ERVK-21P61565 698 aa12.39□□□□□ -0.43
VRK3-210ENST00000596121 SLC39A14Q15043 492 aa12.39□□□□□ -0.43
VRK3-210ENST00000596121 ZRSR1Q15695 479 aaKnown RBP12.39□□□□□ -0.43
VRK3-210ENST00000596121 SLC24A5Q71RS6 500 aa12.39□□□□□ -0.43
VRK3-210ENST00000596121 IFNLR1Q8IU57 520 aaPredicted RBP12.39□□□□□ -0.43
VRK3-210ENST00000596121 NPAS4Q8IUM7 802 aa12.39□□□□□ -0.43
VRK3-210ENST00000596121 ARNTL2Q8WYA1 636 aa12.39□□□□□ -0.43
VRK3-210ENST00000596121 CHAMP1Q96JM3 812 aa12.39□□□□□ -0.43
VRK3-210ENST00000596121 YME1L1Q96TA2 773 aa12.39□□□□□ -0.43
VRK3-210ENST00000596121 CSRNP2Q9H175 543 aa12.39□□□□□ -0.43
VRK3-210ENST00000596121 ZSCAN16Q9H4T2 348 aaPredicted RBP12.39□□□□□ -0.43
VRK3-210ENST00000596121 MTUS1Q9ULD2 1270 aa12.39□□□□□ -0.43
VRK3-210ENST00000596121 STXBP5LQ9Y2K9 1186 aa12.39□□□□□ -0.43
VRK3-210ENST00000596121 TTLL13PA6NNM8 815 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 BMP15O95972 392 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 F13A1P00488 732 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 FGFR1P11362 822 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 NASPP49321 788 aaPredicted RBP12.38□□□□□ -0.43
VRK3-210ENST00000596121 MBTD1Q05BQ5 628 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 MXD4Q14582 209 aaPredicted RBP12.38□□□□□ -0.43
VRK3-210ENST00000596121 KARSQ15046 597 aaKnown RBP12.38□□□□□ -0.43
VRK3-210ENST00000596121 AMHR2Q16671 573 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 FOXD4L6Q3SYB3 417 aaPredicted RBP12.38□□□□□ -0.43
VRK3-210ENST00000596121 ODR4Q5SWX8 454 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 UBXN11Q5T124 520 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 RINT1Q6NUQ1 792 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 FOXD4L3Q6VB84 417 aaPredicted RBP12.38□□□□□ -0.43
VRK3-210ENST00000596121 C1orf186Q6ZWK4 172 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 CATSPER4Q7RTX7 472 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 SRGAP1Q7Z6B7 1085 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 ZNF598Q86UK7 904 aaKnown RBP12.38□□□□□ -0.43
VRK3-210ENST00000596121 CABP7Q86V35 215 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 ECHDC2Q86YB7 292 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 DAW1Q8N136 415 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 EPSTI1Q96J88 318 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 CCDC43Q96MW1 224 aaKnown RBP12.38□□□□□ -0.43
VRK3-210ENST00000596121 BLOC1S4Q9NUP1 217 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 HCSTQ9UBK5 93 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 DNM3Q9UQ16 869 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 SRPRBQ9Y5M8 271 aaKnown RBP12.38□□□□□ -0.43
VRK3-210ENST00000596121 STK24Q9Y6E0 443 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 TRANK1O15050 2925 aa12.38□□□□□ -0.43
VRK3-210ENST00000596121 A0A0U1RQF3 1178 aa12.37□□□□□ -0.43
VRK3-210ENST00000596121 MEIS3P2A8K0S8 358 aa12.37□□□□□ -0.43
VRK3-210ENST00000596121 B4GALT5O43286 388 aa12.37□□□□□ -0.43
VRK3-210ENST00000596121 EDN1P05305 212 aa12.37□□□□□ -0.43
VRK3-210ENST00000596121 SFPQP23246 707 aaKnown RBP eCLIP12.37□□□□□ -0.43
VRK3-210ENST00000596121 LONP1P36776 959 aaKnown RBP12.37□□□□□ -0.43
VRK3-210ENST00000596121 SLC12A3P55017 1021 aa12.37□□□□□ -0.43
VRK3-210ENST00000596121 POU5F1BQ06416 359 aa12.37□□□□□ -0.43
VRK3-210ENST00000596121 MAPK7Q13164 816 aa12.37□□□□□ -0.43
VRK3-210ENST00000596121 PAN2Q504Q3 1202 aaKnown RBP12.37□□□□□ -0.43
VRK3-210ENST00000596121 LINC00301Q8NCQ3 95 aa12.37□□□□□ -0.43
VRK3-210ENST00000596121 MCPH1Q8NEM0 835 aa12.37□□□□□ -0.43
VRK3-210ENST00000596121 AK8Q96MA6 479 aa12.37□□□□□ -0.43
VRK3-210ENST00000596121 TGS1Q96RS0 853 aaKnown RBP12.37□□□□□ -0.43
VRK3-210ENST00000596121 CHST12Q9NRB3 414 aa12.37□□□□□ -0.43
VRK3-210ENST00000596121 C1orf112Q9NSG2 853 aa12.37□□□□□ -0.43
VRK3-210ENST00000596121 AGPAT5Q9NUQ2 364 aa12.37□□□□□ -0.43
VRK3-210ENST00000596121 TMEM161AQ9NX61 479 aa12.37□□□□□ -0.43
VRK3-210ENST00000596121 PIN4Q9Y237 131 aaKnown RBP12.37□□□□□ -0.43
VRK3-210ENST00000596121 USP20Q9Y2K6 914 aa12.37□□□□□ -0.43
VRK3-210ENST00000596121 PCDHB7Q9Y5E2 793 aa12.37□□□□□ -0.43
VRK3-210ENST00000596121 MRPL42Q9Y6G3 142 aaKnown RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms