RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 PDE12Q6L8Q7 609 aaKnown RBP11.74□□□□□ -0.53
LIG3-212ENST00000590181 RNF135Q8IUD6 432 aa11.74□□□□□ -0.53
LIG3-212ENST00000590181 PRSS33Q8NF86 280 aa11.74□□□□□ -0.53
LIG3-212ENST00000590181 OXER1Q8TDS5 423 aa11.74□□□□□ -0.53
LIG3-212ENST00000590181 PHOX2BQ99453 314 aa11.74□□□□□ -0.53
LIG3-212ENST00000590181 KIF2CQ99661 725 aa11.74□□□□□ -0.53
LIG3-212ENST00000590181 HSD17B14Q9BPX1 270 aa11.74□□□□□ -0.53
LIG3-212ENST00000590181 RAB34Q9BZG1 259 aa11.74□□□□□ -0.53
LIG3-212ENST00000590181 ADAMTS10Q9H324 1103 aa11.74□□□□□ -0.53
LIG3-212ENST00000590181 RC3H2Q9HBD1 1191 aaKnown RBP11.74□□□□□ -0.53
LIG3-212ENST00000590181 ANKEF1Q9NU02 776 aa11.74□□□□□ -0.53
LIG3-212ENST00000590181 TMEM161AQ9NX61 479 aa11.74□□□□□ -0.53
LIG3-212ENST00000590181 STK39Q9UEW8 545 aa11.74□□□□□ -0.53
LIG3-212ENST00000590181 SEPT9Q9UHD8 586 aaPredicted RBP11.74□□□□□ -0.53
LIG3-212ENST00000590181 SPTBN4Q9H254 2564 aa11.74□□□□□ -0.53
LIG3-212ENST00000590181 C9IYK1 514 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 GRM6O15303 877 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 STBD1O95210 358 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 LARGE1O95461 756 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 LINC00271P0C7V0 271 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 DARSP14868 501 aaKnown RBP11.73□□□□□ -0.53
LIG3-212ENST00000590181 U2AF2P26368 475 aaKnown RBP eCLIP11.73□□□□□ -0.53
LIG3-212ENST00000590181 RAB27AP51159 221 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 GPC3P51654 580 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 PLXNA3P51805 1871 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 UBE3AQ05086 875 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 SPIRE1Q08AE8 756 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 NCBP1Q09161 790 aaKnown RBP11.73□□□□□ -0.53
LIG3-212ENST00000590181 NR5A1Q13285 461 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 PDIA5Q14554 519 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 KIZQ2M2Z5 673 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 CTC1Q2NKJ3 1217 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 ANO5Q75V66 913 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 SRGAP1Q7Z6B7 1085 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 RTN4RL1Q86UN2 441 aaPredicted RBP11.73□□□□□ -0.53
LIG3-212ENST00000590181 NOSTRINQ8IVI9 506 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 CCDC83Q8IWF9 413 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 ERMNQ8TAM6 284 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 MTMR9Q96QG7 549 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 CEP89Q96ST8 783 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 ADAM2Q99965 735 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 DHX33Q9H6R0 707 aaKnown RBP11.73□□□□□ -0.53
LIG3-212ENST00000590181 TTC12Q9H892 705 aaPredicted RBP11.73□□□□□ -0.53
LIG3-212ENST00000590181 ATP6V0A4Q9HBG4 840 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 TUFT1Q9NNX1 390 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 CD207Q9UJ71 328 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 NOC2LQ9Y3T9 749 aaKnown RBP11.73□□□□□ -0.53
LIG3-212ENST00000590181 PCDHB12Q9Y5F1 795 aa11.73□□□□□ -0.53
LIG3-212ENST00000590181 ZFHX2Q9C0A1 2572 aaPredicted RBP11.72□□□□□ -0.53
LIG3-212ENST00000590181 A0A0U1RQF3 1178 aa11.72□□□□□ -0.53
LIG3-212ENST00000590181 LINC01565O15544 149 aa11.72□□□□□ -0.53
LIG3-212ENST00000590181 DGAT1O75907 488 aa11.72□□□□□ -0.53
LIG3-212ENST00000590181 SLITRK3O94933 977 aa11.72□□□□□ -0.53
LIG3-212ENST00000590181 VTNP04004 478 aa11.72□□□□□ -0.53
LIG3-212ENST00000590181 YWHABP31946 246 aaKnown RBP11.72□□□□□ -0.53
LIG3-212ENST00000590181 GTF2F1P35269 517 aaKnown RBP eCLIP11.72□□□□□ -0.53
LIG3-212ENST00000590181 NDUFV1P49821 464 aa11.72□□□□□ -0.53
LIG3-212ENST00000590181 POLGP54098 1239 aaPredicted RBP11.72□□□□□ -0.53
LIG3-212ENST00000590181 PTPN5P54829 565 aa11.72□□□□□ -0.53
LIG3-212ENST00000590181 TMEM62Q0P6H9 643 aa11.72□□□□□ -0.53
LIG3-212ENST00000590181 UGCGQ16739 394 aa11.72□□□□□ -0.53
LIG3-212ENST00000590181 TMEM266Q2M3C6 531 aa11.72□□□□□ -0.53
LIG3-212ENST00000590181 MTERF2Q49AM1 385 aa11.72□□□□□ -0.53
LIG3-212ENST00000590181 NLRP7Q8WX94 980 aa11.72□□□□□ -0.53
LIG3-212ENST00000590181 PSPC1Q8WXF1 523 aaKnown RBP11.72□□□□□ -0.53
LIG3-212ENST00000590181 CEP170P1Q96L14 293 aa11.72□□□□□ -0.53
LIG3-212ENST00000590181 SCLT1Q96NL6 688 aa11.72□□□□□ -0.53
LIG3-212ENST00000590181 LXNQ9BS40 222 aa11.72□□□□□ -0.53
LIG3-212ENST00000590181 IGFLR1Q9H665 355 aa11.72□□□□□ -0.53
LIG3-212ENST00000590181 SUCLA2Q9P2R7 463 aaPredicted RBP11.72□□□□□ -0.53
LIG3-212ENST00000590181 GINS2Q9Y248 185 aa11.72□□□□□ -0.53
LIG3-212ENST00000590181 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.72□□□□□ -0.53
LIG3-212ENST00000590181 CACNA1HO95180 2353 aa11.72□□□□□ -0.53
LIG3-212ENST00000590181 TMEM221A6NGB7 291 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 M0R296 226 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 EML1O00423 815 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 JAK2O60674 1132 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 ZNF623O75123 536 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 AXLP30530 894 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 CLCN3P51790 818 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 TFDP1Q14186 410 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 DSC3Q14574 896 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 BMS1Q14692 1282 aaKnown RBP11.71□□□□□ -0.53
LIG3-212ENST00000590181 HAUS3Q68CZ6 603 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 TRMT1LQ7Z2T5 733 aaKnown RBP11.71□□□□□ -0.53
LIG3-212ENST00000590181 FAM228AQ86W67 206 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 POTEDQ86YR6 584 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 TPH2Q8IWU9 490 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 SUGP1Q8IWZ8 645 aaKnown RBP11.71□□□□□ -0.53
LIG3-212ENST00000590181 CNNM3Q8NE01 707 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 TMEM40Q8WWA1 233 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 EDAQ92838 391 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 CCDC43Q96MW1 224 aaKnown RBP11.71□□□□□ -0.53
LIG3-212ENST00000590181 NACC1Q96RE7 527 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 OSMRQ99650 979 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 EIF2AK1Q9BQI3 630 aaKnown RBP11.71□□□□□ -0.53
LIG3-212ENST00000590181 POLR3CQ9BUI4 534 aaPredicted RBP11.71□□□□□ -0.53
LIG3-212ENST00000590181 MRPL9Q9BYD2 267 aaKnown RBP11.71□□□□□ -0.53
LIG3-212ENST00000590181 NFKBIZQ9BYH8 718 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 TMEM117Q9H0C3 514 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms