RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 CMTR2Q8IYT2 770 aaKnown RBP12.1□□□□□ -0.47
CLIP3-203ENST00000586457 MCPH1Q8NEM0 835 aa12.1□□□□□ -0.47
CLIP3-203ENST00000586457 SP7Q8TDD2 431 aaPredicted RBP12.1□□□□□ -0.47
CLIP3-203ENST00000586457 INTS4Q96HW7 963 aaKnown RBP12.1□□□□□ -0.47
CLIP3-203ENST00000586457 C11orf84Q9BUA3 381 aaPredicted RBP12.1□□□□□ -0.47
CLIP3-203ENST00000586457 ELAC1Q9H777 363 aaKnown RBP12.1□□□□□ -0.47
CLIP3-203ENST00000586457 TMEM161AQ9NX61 479 aa12.1□□□□□ -0.47
CLIP3-203ENST00000586457 LMCD1Q9NZU5 365 aa12.1□□□□□ -0.47
CLIP3-203ENST00000586457 DBR1Q9UK59 544 aaKnown RBP12.1□□□□□ -0.47
CLIP3-203ENST00000586457 KIAA1024Q9UPX6 916 aa12.1□□□□□ -0.47
CLIP3-203ENST00000586457 PCDHB12Q9Y5F1 795 aa12.1□□□□□ -0.47
CLIP3-203ENST00000586457 MICAL3Q7RTP6 2002 aa12.1□□□□□ -0.47
CLIP3-203ENST00000586457 A0A087WWV3 80 aa12.09□□□□□ -0.47
CLIP3-203ENST00000586457 VWA3AA6NCI4 1184 aa12.09□□□□□ -0.47
CLIP3-203ENST00000586457 INO80B-WBP1J3KQ70 363 aa12.09□□□□□ -0.47
CLIP3-203ENST00000586457 MGEA5O60502 916 aa12.09□□□□□ -0.47
CLIP3-203ENST00000586457 MED24O75448 989 aa12.09□□□□□ -0.47
CLIP3-203ENST00000586457 EOMESO95936 686 aa12.09□□□□□ -0.47
CLIP3-203ENST00000586457 BMPR1AP36894 532 aa12.09□□□□□ -0.47
CLIP3-203ENST00000586457 RARRES1P49788 294 aa12.09□□□□□ -0.47
CLIP3-203ENST00000586457 ADGRE1Q14246 886 aa12.09□□□□□ -0.47
CLIP3-203ENST00000586457 POTEGQ6S5H5 508 aa12.09□□□□□ -0.47
CLIP3-203ENST00000586457 PADI6Q6TGC4 694 aa12.09□□□□□ -0.47
CLIP3-203ENST00000586457 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.09□□□□□ -0.47
CLIP3-203ENST00000586457 ZBTB8OSQ8IWT0 167 aa12.09□□□□□ -0.47
CLIP3-203ENST00000586457 GDPD5Q8WTR4 605 aa12.09□□□□□ -0.47
CLIP3-203ENST00000586457 PGBD4Q96DM1 585 aa12.09□□□□□ -0.47
CLIP3-203ENST00000586457 IFT74Q96LB3 600 aa12.09□□□□□ -0.47
CLIP3-203ENST00000586457 CEP89Q96ST8 783 aa12.09□□□□□ -0.47
CLIP3-203ENST00000586457 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.09□□□□□ -0.47
CLIP3-203ENST00000586457 DDX19AQ9NUU7 478 aaKnown RBP12.09□□□□□ -0.47
CLIP3-203ENST00000586457 LRRIQ4A6NIV6 560 aa12.08□□□□□ -0.48
CLIP3-203ENST00000586457 C9IYK1 514 aa12.08□□□□□ -0.48
CLIP3-203ENST00000586457 ARHGEF15O94989 841 aa12.08□□□□□ -0.48
CLIP3-203ENST00000586457 SSBP05455 408 aaKnown RBP eCLIP12.08□□□□□ -0.48
CLIP3-203ENST00000586457 SPATA31C1P0DKV0 1188 aa12.08□□□□□ -0.48
CLIP3-203ENST00000586457 PDIA4P13667 645 aaKnown RBP12.08□□□□□ -0.48
CLIP3-203ENST00000586457 POU3F3P20264 500 aaPredicted RBP12.08□□□□□ -0.48
CLIP3-203ENST00000586457 UBA7P41226 1012 aa12.08□□□□□ -0.48
CLIP3-203ENST00000586457 RAB27AP51159 221 aa12.08□□□□□ -0.48
CLIP3-203ENST00000586457 PPP2R5AQ15172 486 aa12.08□□□□□ -0.48
CLIP3-203ENST00000586457 PCBP1Q15365 356 aaKnown RBP eCLIP12.08□□□□□ -0.48
CLIP3-203ENST00000586457 AAK1Q2M2I8 961 aa12.08□□□□□ -0.48
CLIP3-203ENST00000586457 ARL6IP4Q66PJ3 421 aaKnown RBP12.08□□□□□ -0.48
CLIP3-203ENST00000586457 HACE1Q8IYU2 909 aa12.08□□□□□ -0.48
CLIP3-203ENST00000586457 C4orf32Q8N8J7 132 aa12.08□□□□□ -0.48
CLIP3-203ENST00000586457 LINC01599Q8WXQ3 324 aa12.08□□□□□ -0.48
CLIP3-203ENST00000586457 PPP2R3CQ969Q6 453 aa12.08□□□□□ -0.48
CLIP3-203ENST00000586457 PLVAPQ9BX97 442 aa12.08□□□□□ -0.48
CLIP3-203ENST00000586457 TRIM6Q9C030 488 aaPredicted RBP12.08□□□□□ -0.48
CLIP3-203ENST00000586457 POLR3FQ9H1D9 316 aaPredicted RBP12.08□□□□□ -0.48
CLIP3-203ENST00000586457 MTCH2Q9Y6C9 303 aa12.08□□□□□ -0.48
CLIP3-203ENST00000586457 WDR81Q562E7 1941 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 A0A0U1RQF3 1178 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 H3BNC9 293 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 RBAK-RBAKDNI3L0D1 243 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 SYT1P21579 422 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 AXLP30530 894 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 FAM189BP81408 668 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 RNASELQ05823 741 aaKnown RBP12.07□□□□□ -0.48
CLIP3-203ENST00000586457 DSC3Q14574 896 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 CSPP1Q1MSJ5 1256 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 NAALADL2Q58DX5 795 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 EP400NLQ6ZTU2 488 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 ECHDC2Q86YB7 292 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 IGSF22Q8N9C0 903 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 DEPTORQ8TB45 409 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 MICAL1Q8TDZ2 1067 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 SNX21Q969T3 373 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 ZNF689Q96CS4 500 aaPredicted RBP12.07□□□□□ -0.48
CLIP3-203ENST00000586457 CALML4Q96GE6 196 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 TMEM117Q9H0C3 514 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 NT5C3AQ9H0P0 336 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 BHMT2Q9H2M3 363 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 IFT122Q9HBG6 1241 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 PUF60Q9UHX1 559 aaKnown RBP12.07□□□□□ -0.48
CLIP3-203ENST00000586457 KCNG1Q9UIX4 513 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 MRPL42Q9Y6G3 142 aaKnown RBP12.07□□□□□ -0.48
CLIP3-203ENST00000586457 LOXHD1Q8IVV2 1947 aa12.07□□□□□ -0.48
CLIP3-203ENST00000586457 EPOPA6NHQ4 379 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 FGFR1P11362 822 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 LIG1P18858 919 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 CYP11B2P19099 503 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 ARL2P36404 184 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 ATP2C1P98194 919 aaPredicted RBP12.06□□□□□ -0.48
CLIP3-203ENST00000586457 KRT17Q04695 432 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 POU5F1BQ06416 359 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 BMS1Q14692 1282 aaKnown RBP12.06□□□□□ -0.48
CLIP3-203ENST00000586457 NOTUMQ6P988 496 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 GLB1LQ6UWU2 654 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 SPRED2Q7Z698 418 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 THNSL1Q8IYQ7 743 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 KCTD17Q8N5Z5 321 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 CNNM3Q8NE01 707 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 URGCPQ8TCY9 931 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 RSPH1Q8WYR4 309 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 SYMPKQ92797 1274 aaKnown RBP12.06□□□□□ -0.48
CLIP3-203ENST00000586457 KIFAP3Q92845 792 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 CLP1Q92989 425 aaKnown RBP12.06□□□□□ -0.48
CLIP3-203ENST00000586457 MRPL38Q96DV4 380 aaKnown RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms