RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 TSHZ2Q9NRE2 1034 aa13.11□□□□□ -0.31
LIG3-207ENST00000586119 RNF216Q9NWF9 866 aaPredicted RBP13.11□□□□□ -0.31
LIG3-207ENST00000586119 HCFC2Q9Y5Z7 792 aa13.11□□□□□ -0.31
LIG3-207ENST00000586119 NID2Q14112 1375 aa13.1□□□□□ -0.31
LIG3-207ENST00000586119 GAS7O60861 476 aa13.1□□□□□ -0.31
LIG3-207ENST00000586119 PSMD10O75832 226 aa13.1□□□□□ -0.31
LIG3-207ENST00000586119 CXCL14O95715 111 aa13.1□□□□□ -0.31
LIG3-207ENST00000586119 IFNAR1P17181 557 aa13.1□□□□□ -0.31
LIG3-207ENST00000586119 AVPR2P30518 371 aa13.1□□□□□ -0.31
LIG3-207ENST00000586119 CA8P35219 290 aa13.1□□□□□ -0.31
LIG3-207ENST00000586119 USP11P51784 963 aa13.1□□□□□ -0.31
LIG3-207ENST00000586119 AKAP17AQ02040 695 aaKnown RBP13.1□□□□□ -0.31
LIG3-207ENST00000586119 KRT17Q04695 432 aa13.1□□□□□ -0.31
LIG3-207ENST00000586119 TBC1D8BQ0IIM8 1120 aa13.1□□□□□ -0.31
LIG3-207ENST00000586119 PTPN21Q16825 1174 aa13.1□□□□□ -0.31
LIG3-207ENST00000586119 LRCH2Q5VUJ6 765 aa13.1□□□□□ -0.31
LIG3-207ENST00000586119 MIER3Q7Z3K6 550 aa13.1□□□□□ -0.31
LIG3-207ENST00000586119 SUGP1Q8IWZ8 645 aaKnown RBP13.1□□□□□ -0.31
LIG3-207ENST00000586119 ZNF579Q8NAF0 562 aaKnown RBP13.1□□□□□ -0.31
LIG3-207ENST00000586119 CCDC12Q8WUD4 166 aaPredicted RBP13.1□□□□□ -0.31
LIG3-207ENST00000586119 SCLT1Q96NL6 688 aa13.1□□□□□ -0.31
LIG3-207ENST00000586119 TEKT3Q9BXF9 490 aa13.1□□□□□ -0.31
LIG3-207ENST00000586119 RNF26Q9BY78 433 aaPredicted RBP13.1□□□□□ -0.31
LIG3-207ENST00000586119 POMKQ9H5K3 350 aa13.1□□□□□ -0.31
LIG3-207ENST00000586119 SEPT9Q9UHD8 586 aaPredicted RBP13.1□□□□□ -0.31
LIG3-207ENST00000586119 DDX11L8A8MPP1 907 aa13.09□□□□□ -0.31
LIG3-207ENST00000586119 C2CD4DB7Z1M9 353 aa13.09□□□□□ -0.31
LIG3-207ENST00000586119 EML1O00423 815 aa13.09□□□□□ -0.31
LIG3-207ENST00000586119 HOXA2O43364 376 aa13.09□□□□□ -0.31
LIG3-207ENST00000586119 B4GALT3O60512 393 aa13.09□□□□□ -0.31
LIG3-207ENST00000586119 AFF1P51825 1210 aaKnown RBP13.09□□□□□ -0.31
LIG3-207ENST00000586119 TOB2Q14106 344 aaPredicted RBP13.09□□□□□ -0.31
LIG3-207ENST00000586119 NPY5RQ15761 445 aa13.09□□□□□ -0.31
LIG3-207ENST00000586119 MCTP2Q6DN12 878 aa13.09□□□□□ -0.31
LIG3-207ENST00000586119 B3GNT9Q6UX72 402 aa13.09□□□□□ -0.31
LIG3-207ENST00000586119 FAM43BQ6ZT52 329 aaPredicted RBP13.09□□□□□ -0.31
LIG3-207ENST00000586119 KREMEN2Q8NCW0 462 aa13.09□□□□□ -0.31
LIG3-207ENST00000586119 RIT2Q99578 217 aa13.09□□□□□ -0.31
LIG3-207ENST00000586119 NIFKQ9BYG3 293 aaKnown RBP13.09□□□□□ -0.31
LIG3-207ENST00000586119 NRDE2Q9H7Z3 1164 aa13.09□□□□□ -0.31
LIG3-207ENST00000586119 IGKV6-21A0A0C4DH24 114 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 M0R2N6 131 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 BRD1O95696 1058 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 EOMESO95936 686 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 ASGR2P07307 311 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 EPCAMP16422 314 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 PHKA2P46019 1235 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 SMC1AQ14683 1233 aaKnown RBP13.08□□□□□ -0.32
LIG3-207ENST00000586119 Q4G0T1 1027 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 RARS2Q5T160 578 aaKnown RBP13.08□□□□□ -0.32
LIG3-207ENST00000586119 PLA2G4FQ68DD2 849 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 ZBTB33Q86T24 672 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 ZNF280BQ86YH2 543 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 RHPN2Q8IUC4 686 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 VPS52Q8N1B4 723 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 FBXL16Q8N461 479 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 BICD2Q8TD16 824 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 CASP10Q92851 521 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 VN1R3Q9BXE9 311 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 GCOM2Q9BZD3 368 aaPredicted RBP13.08□□□□□ -0.32
LIG3-207ENST00000586119 ADAM7Q9H2U9 754 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 SUCLA2Q9P2R7 463 aaPredicted RBP13.08□□□□□ -0.32
LIG3-207ENST00000586119 DNAJB4Q9UDY4 337 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 INPP5FQ9Y2H2 1132 aa13.08□□□□□ -0.32
LIG3-207ENST00000586119 H0Y858 1186 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 SLC37A4O43826 429 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 ZC3H11AO75152 810 aaKnown RBP eCLIP13.07□□□□□ -0.32
LIG3-207ENST00000586119 OFD1O75665 1012 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 GALTP07902 379 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 HOXB8P17481 243 aaPredicted RBP13.07□□□□□ -0.32
LIG3-207ENST00000586119 SFNP31947 248 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 PPM1AP35813 382 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 ALDH7A1P49419 539 aaKnown RBP13.07□□□□□ -0.32
LIG3-207ENST00000586119 JAK3P52333 1124 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 PTPN5P54829 565 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 NPEPPSP55786 919 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 EVCP57679 992 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 STK3Q13188 491 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 XKR3Q5GH77 459 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 ANO5Q75V66 913 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 CCDC148Q8NFR7 591 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 ETNPPLQ8TBG4 499 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 SLC22A17Q8WUG5 538 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 RIPOR3Q96MK2 946 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 GBP3Q9H0R5 595 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 ZBP1Q9H171 429 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 GJB4Q9NTQ9 266 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 TBC1D13Q9NVG8 400 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 WRAP73Q9P2S5 460 aaPredicted RBP13.07□□□□□ -0.32
LIG3-207ENST00000586119 LIMD1Q9UGP4 676 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 PCDHA4Q9UN74 947 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 KCNJ14Q9UNX9 436 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 GTF3C3Q9Y5Q9 886 aa13.07□□□□□ -0.32
LIG3-207ENST00000586119 CACNA1HO95180 2353 aa13.06□□□□□ -0.32
LIG3-207ENST00000586119 CYP3A7-CYP3A51PA0A087WV96 503 aa13.06□□□□□ -0.32
LIG3-207ENST00000586119 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.06□□□□□ -0.32
LIG3-207ENST00000586119 MAFO75444 373 aaPredicted RBP13.06□□□□□ -0.32
LIG3-207ENST00000586119 DDHD2O94830 711 aa13.06□□□□□ -0.32
LIG3-207ENST00000586119 SRGAP2BP0DMP2 458 aa13.06□□□□□ -0.32
LIG3-207ENST00000586119 CYP3A7P24462 503 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms