RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 TMEM143Q96AN5 459 aa13.81□□□□□ -0.2
SS18-225ENST00000585121 UHRF1Q96T88 793 aaPredicted RBP13.81□□□□□ -0.2
SS18-225ENST00000585121 MTRQ99707 1265 aa13.81□□□□□ -0.2
SS18-225ENST00000585121 HSD17B14Q9BPX1 270 aa13.81□□□□□ -0.2
SS18-225ENST00000585121 TMEM117Q9H0C3 514 aa13.81□□□□□ -0.2
SS18-225ENST00000585121 UBE2ZQ9H832 354 aaPredicted RBP13.81□□□□□ -0.2
SS18-225ENST00000585121 ANKEF1Q9NU02 776 aa13.81□□□□□ -0.2
SS18-225ENST00000585121 A0A0U1RQF3 1178 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 GRM6O15303 877 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 OR52Z1P0C646 297 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 LINC00271P0C7V0 271 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 SRGAP2CP0DJJ0 459 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 FGFR1P11362 822 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 LAMTOR4Q0VGL1 99 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 MXD4Q14582 209 aaPredicted RBP13.8□□□□□ -0.2
SS18-225ENST00000585121 TCEAL5Q5H9L2 206 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 TWF2Q6IBS0 349 aaKnown RBP13.8□□□□□ -0.2
SS18-225ENST00000585121 EP400NLQ6ZTU2 488 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 SRGAP1Q7Z6B7 1085 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 KSR1Q8IVT5 923 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 KLHL23Q8NBE8 558 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 TMEM60Q9H2L4 133 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 ALG13Q9NP73 1137 aaKnown RBP13.8□□□□□ -0.2
SS18-225ENST00000585121 BMP2KQ9NSY1 1161 aaPredicted RBP13.8□□□□□ -0.2
SS18-225ENST00000585121 TYW1Q9NV66 732 aaKnown RBP13.8□□□□□ -0.2
SS18-225ENST00000585121 PLAGL2Q9UPG8 496 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 PIN4Q9Y237 131 aaKnown RBP13.8□□□□□ -0.2
SS18-225ENST00000585121 WNT7AO00755 349 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 ZBTB39O15060 712 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 DGAT1O75907 488 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 XRCC6P12956 609 aaKnown RBP eCLIP13.8□□□□□ -0.2
SS18-225ENST00000585121 LAG3P18627 525 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 NCBP1Q09161 790 aaKnown RBP13.8□□□□□ -0.2
SS18-225ENST00000585121 TFDP1Q14186 410 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 TMX3Q96JJ7 454 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 TUFT1Q9NNX1 390 aa13.8□□□□□ -0.2
SS18-225ENST00000585121 COL4A4P53420 1690 aaPredicted RBP13.79□□□□□ -0.2
SS18-225ENST00000585121 LOXHD1Q8IVV2 1947 aa13.79□□□□□ -0.2
SS18-225ENST00000585121 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.79□□□□□ -0.2
SS18-225ENST00000585121 POTEMA6NI47 508 aa13.79□□□□□ -0.2
SS18-225ENST00000585121 H3BQV1 296 aa13.79□□□□□ -0.2
SS18-225ENST00000585121 TNFRSF10AO00220 468 aa13.79□□□□□ -0.2
SS18-225ENST00000585121 ITGB1P05556 798 aa13.79□□□□□ -0.2
SS18-225ENST00000585121 BMP1P13497 986 aa13.79□□□□□ -0.2
SS18-225ENST00000585121 U2AF2P26368 475 aaKnown RBP eCLIP13.79□□□□□ -0.21e-7■■■□□ 16.4
SS18-225ENST00000585121 TECP42680 631 aa13.79□□□□□ -0.2
SS18-225ENST00000585121 PHKA2P46019 1235 aa13.79□□□□□ -0.2
SS18-225ENST00000585121 RAB27AP51159 221 aa13.79□□□□□ -0.2
SS18-225ENST00000585121 KCNQ1P51787 676 aa13.79□□□□□ -0.2
SS18-225ENST00000585121 UBE3AQ05086 875 aa13.79□□□□□ -0.2
SS18-225ENST00000585121 MCTP1Q6DN14 999 aa13.79□□□□□ -0.2
SS18-225ENST00000585121 FERMT3Q86UX7 667 aa13.79□□□□□ -0.2
SS18-225ENST00000585121 THNSL1Q8IYQ7 743 aa13.79□□□□□ -0.2
SS18-225ENST00000585121 LRRC43Q8N309 656 aa13.79□□□□□ -0.2
SS18-225ENST00000585121 RNF149Q8NC42 400 aa13.79□□□□□ -0.2
SS18-225ENST00000585121 SPPL3Q8TCT6 385 aa13.79□□□□□ -0.2
SS18-225ENST00000585121 RSPH1Q8WYR4 309 aa13.79□□□□□ -0.2
SS18-225ENST00000585121 NACC1Q96RE7 527 aa13.79□□□□□ -0.2
SS18-225ENST00000585121 WDR81Q562E7 1941 aa13.78□□□□□ -0.2
SS18-225ENST00000585121 CSPG5O95196 566 aa13.78□□□□□ -0.2
SS18-225ENST00000585121 KCNA5P22460 613 aa13.78□□□□□ -0.2
SS18-225ENST00000585121 PCBP1Q15365 356 aaKnown RBP eCLIP13.78□□□□□ -0.2
SS18-225ENST00000585121 HAUS3Q68CZ6 603 aa13.78□□□□□ -0.2
SS18-225ENST00000585121 COLGALT1Q8NBJ5 622 aa13.78□□□□□ -0.2
SS18-225ENST00000585121 MICAL1Q8TDZ2 1067 aa13.78□□□□□ -0.2
SS18-225ENST00000585121 PIGOQ8TEQ8 1089 aa13.78□□□□□ -0.2
SS18-225ENST00000585121 POF1BQ8WVV4 589 aa13.78□□□□□ -0.2
SS18-225ENST00000585121 PGBD4Q96DM1 585 aa13.78□□□□□ -0.2
SS18-225ENST00000585121 PABPC5Q96DU9 382 aaKnown RBP13.78□□□□□ -0.2
SS18-225ENST00000585121 TBC1D32Q96NH3 1257 aa13.78□□□□□ -0.2
SS18-225ENST00000585121 CASD1Q96PB1 797 aa13.78□□□□□ -0.2
SS18-225ENST00000585121 POLR3CQ9BUI4 534 aaPredicted RBP13.78□□□□□ -0.2
SS18-225ENST00000585121 TRAIPQ9BWF2 469 aa13.78□□□□□ -0.2
SS18-225ENST00000585121 MRPL9Q9BYD2 267 aaKnown RBP13.78□□□□□ -0.2
SS18-225ENST00000585121 RAB34Q9BZG1 259 aa13.78□□□□□ -0.2
SS18-225ENST00000585121 IFT122Q9HBG6 1241 aa13.78□□□□□ -0.2
SS18-225ENST00000585121 PUF60Q9UHX1 559 aaKnown RBP13.78□□□□□ -0.2
SS18-225ENST00000585121 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.78□□□□□ -0.2
SS18-225ENST00000585121 STK24Q9Y6E0 443 aa13.78□□□□□ -0.2
SS18-225ENST00000585121 XIRP2A4UGR9 3374 aa13.78□□□□□ -0.2
SS18-225ENST00000585121 ERLIN2O94905 339 aa13.77□□□□□ -0.21
SS18-225ENST00000585121 PPM1AP35813 382 aa13.77□□□□□ -0.21
SS18-225ENST00000585121 RARRES1P49788 294 aa13.77□□□□□ -0.21
SS18-225ENST00000585121 PUS10Q3MIT2 529 aaKnown RBP13.77□□□□□ -0.21
SS18-225ENST00000585121 LEXMQ3ZCV2 418 aa13.77□□□□□ -0.21
SS18-225ENST00000585121 CATSPER3Q86XQ3 398 aa13.77□□□□□ -0.21
SS18-225ENST00000585121 HELQQ8TDG4 1101 aa13.77□□□□□ -0.21
SS18-225ENST00000585121 ZNF558Q96NG5 402 aa13.77□□□□□ -0.21
SS18-225ENST00000585121 CLDND1Q9NY35 253 aa13.77□□□□□ -0.21
SS18-225ENST00000585121 SMC3Q9UQE7 1217 aa13.77□□□□□ -0.21
SS18-225ENST00000585121 FAM50BQ9Y247 325 aa13.77□□□□□ -0.21
SS18-225ENST00000585121 RALGAPA2Q2PPJ7 1873 aa13.77□□□□□ -0.21
SS18-225ENST00000585121 CARNS1A5YM72 827 aa13.76□□□□□ -0.21
SS18-225ENST00000585121 USO1O60763 962 aaKnown RBP13.76□□□□□ -0.21
SS18-225ENST00000585121 FGF18O76093 207 aa13.76□□□□□ -0.21
SS18-225ENST00000585121 SPATA31C1P0DKV0 1188 aa13.76□□□□□ -0.21
SS18-225ENST00000585121 MUTP22033 750 aa13.76□□□□□ -0.21
SS18-225ENST00000585121 RPA1P27694 616 aa13.76□□□□□ -0.21
SS18-225ENST00000585121 GJB2P29033 226 aa13.76□□□□□ -0.21
SS18-225ENST00000585121 KRT17Q04695 432 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms